Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d052180_P001 | Maize | nucleus | 94.12 | 94.12 |
| KXG31156 | Sorghum | nucleus | 96.38 | 93.42 |
| TraesCS6A01G313800.1 | Wheat | nucleus | 91.86 | 89.04 |
| TraesCS6B01G343900.1 | Wheat | cytosol | 91.4 | 88.6 |
| TraesCS6D01G293200.1 | Wheat | nucleus | 91.4 | 88.6 |
| HORVU6Hr1G077300.8 | Barley | nucleus | 90.05 | 86.52 |
| Os02t0761000-01 | Rice | nucleus | 87.33 | 84.65 |
| Zm00001d044899_P001 | Maize | nucleus | 25.34 | 78.87 |
| VIT_03s0017g00360.t01 | Wine grape | nucleus | 19.46 | 68.25 |
| VIT_00s0729g00010.t01 | Wine grape | nucleus | 19.0 | 67.74 |
| VIT_03s0167g00100.t01 | Wine grape | nucleus | 18.1 | 65.57 |
| KRH62216 | Soybean | nucleus | 19.0 | 63.64 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 65.61 | 63.32 |
| VIT_15s0024g01860.t01 | Wine grape | nucleus | 18.55 | 63.08 |
| VIT_03s0017g00440.t01 | Wine grape | nucleus | 25.79 | 60.64 |
| GSMUA_Achr10P... | Banana | nucleus | 61.09 | 59.21 |
| VIT_00s0313g00070.t01 | Wine grape | nucleus | 59.73 | 58.15 |
| VIT_03s0017g00450.t01 | Wine grape | nucleus | 18.55 | 54.67 |
| VIT_15s0024g02000.t01 | Wine grape | nucleus | 21.27 | 54.65 |
| KRH74496 | Soybean | nucleus | 56.11 | 54.63 |
| KRH69674 | Soybean | nucleus | 55.66 | 54.19 |
| CDY13746 | Canola | nucleus | 57.47 | 53.81 |
| Bra038511.1-P | Field mustard | nucleus | 57.47 | 52.7 |
| Bra030228.1-P | Field mustard | nucleus | 56.11 | 52.54 |
| PGSC0003DMT400041773 | Potato | nucleus | 56.56 | 52.52 |
| CDX76906 | Canola | nucleus | 55.66 | 52.12 |
| CDX89487 | Canola | nucleus | 55.66 | 52.12 |
| AT2G22540.1 | Thale cress | nucleus | 55.66 | 51.25 |
| Bra019221.1-P | Field mustard | nucleus | 48.42 | 49.54 |
| CDY11019 | Canola | nucleus | 48.42 | 49.54 |
| VIT_15s0107g00120.t01 | Wine grape | nucleus | 39.82 | 48.89 |
| PGSC0003DMT400024247 | Potato | nucleus | 51.58 | 48.51 |
| CDY03445 | Canola | nucleus | 48.42 | 48.42 |
| Zm00001d027957_P001 | Maize | nucleus | 55.2 | 48.22 |
| Solyc11g010570.1.1 | Tomato | nucleus | 57.47 | 47.92 |
| AT4G24540.1 | Thale cress | nucleus | 47.51 | 47.73 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 63.35 | 47.62 |
| CDX92641 | Canola | nucleus | 47.96 | 46.29 |
| KRH42097 | Soybean | nucleus | 42.53 | 45.85 |
| KRH52935 | Soybean | nucleus | 47.96 | 45.3 |
| PGSC0003DMT400083739 | Potato | nucleus | 44.8 | 44.8 |
| KRH49819 | Soybean | nucleus | 41.63 | 44.66 |
| CDY25607 | Canola | nucleus | 33.94 | 42.86 |
| KRH10603 | Soybean | nucleus | 39.82 | 42.31 |
| KRH21764 | Soybean | nucleus | 38.46 | 41.26 |
| Solyc04g076280.2.1 | Tomato | vacuole | 35.29 | 40.0 |
| Zm00001d027955_P001 | Maize | extracellular, golgi | 31.67 | 38.89 |
| VIT_03s0167g00070.t01 | Wine grape | nucleus | 31.22 | 37.7 |
| VIT_18s0001g07460.t01 | Wine grape | nucleus | 53.39 | 36.88 |
| KRH10606 | Soybean | nucleus | 34.84 | 36.49 |
| Solyc01g105800.2.1 | Tomato | nucleus | 43.89 | 34.77 |
| KRH21757 | Soybean | nucleus | 35.75 | 31.85 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A1D6HL27 | ProteinID:AQK75127.1 | ProteinID:AQK75128.1 | ncoils:Coil |
| GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF171 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI000843A891 | EnsemblPlantsGene:Zm00001d018142 | EnsemblPlants:Zm00001d018142_P001 | EnsemblPlants:Zm00001d018142_T001 | SEG:seg |
Description
MADS-transcription factor 73MADS-box protein SVP
Coordinates
chr5:+:215341246..215348037
Molecular Weight (calculated)
24730.0 Da
IEP (calculated)
5.056
GRAVY (calculated)
-0.724
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MARERREIKR IESAAARQVT FSKRRRGLFK KAQELSVLCD ADVALIVFSS TGKLSQFASS SMNEIIDKYN THSKNLGKTE QPSLDLNLEH SKYANLNEQL
101: AEASLRLRQM RGEELEGLNV EELQQLEKNL ESGLHRVLQT KDQQFLEQIN DLERKSTQLA EENMQLRNQV SQIPPAGKQA VADTENVIAE EGQSSESVMT
201: ALHSGSSQDN DDGSDVSLKL G
101: AEASLRLRQM RGEELEGLNV EELQQLEKNL ESGLHRVLQT KDQQFLEQIN DLERKSTQLA EENMQLRNQV SQIPPAGKQA VADTENVIAE EGQSSESVMT
201: ALHSGSSQDN DDGSDVSLKL G
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
Arabidopsis Description
SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.