Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g010570.1.1 | Tomato | nucleus | 92.44 | 83.02 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 58.4 | 60.7 |
| Zm00001d044899_P001 | Maize | nucleus | 17.65 | 59.15 |
| GSMUA_Achr10P... | Banana | nucleus | 55.46 | 57.89 |
| Zm00001d018142_P001 | Maize | nucleus | 52.52 | 56.56 |
| Zm00001d052180_P001 | Maize | nucleus | 52.1 | 56.11 |
| TraesCS6A01G313800.1 | Wheat | nucleus | 52.94 | 55.26 |
| PGSC0003DMT400024247 | Potato | nucleus | 54.2 | 54.89 |
| TraesCS6D01G293200.1 | Wheat | nucleus | 52.52 | 54.82 |
| Os02t0761000-01 | Rice | nucleus | 52.52 | 54.82 |
| TraesCS6B01G343900.1 | Wheat | cytosol | 52.52 | 54.82 |
| KXG31156 | Sorghum | nucleus | 52.1 | 54.39 |
| Os06t0217300-01 | Rice | nucleus | 50.42 | 53.81 |
| HORVU6Hr1G077300.8 | Barley | nucleus | 51.26 | 53.04 |
| TraesCS7D01G176700.1 | Wheat | nucleus | 48.74 | 51.33 |
| TraesCS4D01G301100.1 | Wheat | nucleus | 48.32 | 50.88 |
| TraesCS4B01G302600.2 | Wheat | nucleus | 47.9 | 50.0 |
| PGSC0003DMT400083739 | Potato | nucleus | 46.22 | 49.77 |
| EER88077 | Sorghum | nucleus | 46.22 | 48.89 |
| HORVU4Hr1G077850.13 | Barley | nucleus | 47.9 | 48.72 |
| TraesCS7A01G175200.2 | Wheat | nucleus | 48.74 | 48.33 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 59.66 | 48.3 |
| TraesCS4A01G002600.1 | Wheat | nucleus | 32.77 | 47.85 |
| TraesCS7B01G080300.2 | Wheat | cytosol | 48.32 | 47.72 |
| Os03t0186600-01 | Rice | nucleus | 48.32 | 46.37 |
| KXG40019 | Sorghum | nucleus | 44.54 | 45.69 |
| Zm00001d027957_P001 | Maize | nucleus | 46.22 | 43.48 |
| Zm00001d027955_P001 | Maize | extracellular, golgi | 25.21 | 33.33 |
| HORVU7Hr1G036130.10 | Barley | nucleus, plastid | 31.51 | 31.25 |
Protein Annotations
| EntrezGene:102605771 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000003 | GO:GO:0000900 |
| GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006412 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009266 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009910 |
| GO:GO:0009987 | GO:GO:0017148 | GO:GO:0019538 | GO:GO:0043565 | GO:GO:0045182 | GO:GO:0045892 |
| GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048438 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| UniProt:M1BBZ0 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | EnsemblPlantsGene:PGSC0003DMG400016203 | PGSC:PGSC0003DMG400016203 |
| EnsemblPlants:PGSC0003DMT400041773 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF179 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI000294FBFF | RefSeq:XP_006353175.1 | SEG:seg | : | : | : |
Description
MADS-box protein JOINTLESS [Source:PGSC_GENE;Acc:PGSC0003DMG400016203]
Coordinates
chr11:-:2317625..2323465
Molecular Weight (calculated)
27172.1 Da
IEP (calculated)
5.279
GRAVY (calculated)
-0.873
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MAREKIQIKK IDNSTARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFDYCNS SMKQILERRD LHSKNLEKLD QPSLELQLVE NSNYSRLSKE
101: ISEKSHRLRQ MRGEELQGLN IEDLQQLERS LETGLSRVIE RKGDKIMREI NQLQQKGMQL MEENEKLRQQ LMEISNNNNN GYKEPVVVAF ESENGFNSNN
201: EEGQSSESVT NPCNSTGPPP QDDDSSDISL KLGLPYSG
101: ISEKSHRLRQ MRGEELQGLN IEDLQQLERS LETGLSRVIE RKGDKIMREI NQLQQKGMQL MEENEKLRQQ LMEISNNNNN GYKEPVVVAF ESENGFNSNN
201: EEGQSSESVT NPCNSTGPPP QDDDSSDISL KLGLPYSG
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
Arabidopsis Description
SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.