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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • mitochondrion 3
  • nucleus 3
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G22540.1 HORVU2Hr1G063800.7 AT1G26310.1 11439126
AT2G22540.1 HORVU5Hr1G095630.3 AT1G26310.1 11439126
AT2G22540.1 HORVU2Hr1G063800.7 AT1G69120.1 11439126
AT2G22540.1 HORVU5Hr1G095630.3 AT1G69120.1 11439126
AT2G22540.1 HORVU2Hr1G063800.7 AT1G69120.1 15805477
AT2G22540.1 HORVU5Hr1G095630.3 AT1G69120.1 15805477
AT2G22540.1 HORVU0Hr1G032300.1 AT2G45650.1 15805477
AT2G22540.1 HORVU6Hr1G066140.9 AT2G45650.1 15805477
AT2G22540.1 HORVU1Hr1G051660.10 AT2G45660.1 15805477
AT2G22540.1 HORVU3Hr1G095080.3 AT2G45660.1 15805477
AT2G22540.1 HORVU3Hr1G095090.1 AT2G45660.1 15805477
AT2G22540.1 HORVU3Hr1G095200.4 AT2G45660.1 15805477
AT2G22540.1 HORVU3Hr1G095240.2 AT2G45660.1 15805477
AT2G22540.1 HORVU4Hr1G085370.1 AT2G45660.1 15805477
AT2G22540.1 HORVU4Hr1G085450.1 AT2G45660.1 15805477
AT2G22540.1 HORVU6Hr1G002270.1 AT2G45660.1 15805477
AT2G22540.1 HORVU6Hr1G002330.14 AT2G45660.1 15805477
AT2G22540.1 HORVU7Hr1G054320.2 AT2G45660.1 15805477
AT2G22540.1 HORVU7Hr1G054390.1 AT2G45660.1 15805477
AT4G24540.1 HORVU2Hr1G063800.7 AT1G26310.1 11439126
AT4G24540.1 HORVU5Hr1G095630.3 AT1G26310.1 11439126
AT4G24540.1 HORVU2Hr1G063800.7 AT1G69120.1 11439126
AT4G24540.1 HORVU5Hr1G095630.3 AT1G69120.1 11439126
AT4G24540.1 HORVU2Hr1G063800.7 AT1G69120.1 15805477
AT4G24540.1 HORVU5Hr1G095630.3 AT1G69120.1 15805477
AT4G24540.1 HORVU2Hr1G001350.2 AT2G18040.1 20129060
AT4G24540.1 HORVU2Hr1G109660.3 AT2G18040.1 20129060
AT4G24540.1 HORVU3Hr1G096490.2 AT2G18040.1 20129060
AT4G24540.1 HORVU4Hr1G072290.1 AT2G18040.1 20129060
AT4G24540.1 HORVU5Hr1G121760.1 AT2G18040.1 20129060
AT4G24540.1 HORVU6Hr1G068220.3 AT2G18040.1 20129060
AT4G24540.1 HORVU0Hr1G032300.1 AT2G45650.1 15805477
AT4G24540.1 HORVU6Hr1G066140.9 AT2G45650.1 15805477
AT4G24540.1 HORVU1Hr1G051660.10 AT2G45660.1 15805477
AT4G24540.1 HORVU3Hr1G095080.3 AT2G45660.1 15805477
AT4G24540.1 HORVU3Hr1G095090.1 AT2G45660.1 15805477
AT4G24540.1 HORVU3Hr1G095200.4 AT2G45660.1 15805477
AT4G24540.1 HORVU3Hr1G095240.2 AT2G45660.1 15805477
AT4G24540.1 HORVU4Hr1G085370.1 AT2G45660.1 15805477
AT4G24540.1 HORVU4Hr1G085450.1 AT2G45660.1 15805477
AT4G24540.1 HORVU6Hr1G002270.1 AT2G45660.1 15805477
AT4G24540.1 HORVU6Hr1G002330.14 AT2G45660.1 15805477
AT4G24540.1 HORVU7Hr1G054320.2 AT2G45660.1 15805477
AT4G24540.1 HORVU7Hr1G054390.1 AT2G45660.1 15805477
AT4G24540.1 HORVU1Hr1G008290.4 AT3G57230.1 15805477
AT4G24540.1 HORVU1Hr1G008300.3 AT3G57230.1 15805477
AT4G24540.1 HORVU2Hr1G080490.1 AT3G57230.1 15805477
AT4G24540.1 HORVU5Hr1G000370.3 AT3G57230.1 15805477
AT4G24540.1 HORVU6Hr1G073040.2 AT3G57230.1 15805477
AT4G24540.1 HORVU7Hr1G023940.2 AT3G57230.1 15805477
AT4G24540.1 HORVU7Hr1G024000.2 AT3G57230.1 15805477
AT4G24540.1 HORVU1Hr1G023620.1 AT4G18960.1 15805477
AT4G24540.1 HORVU1Hr1G029220.1 AT4G18960.1 15805477
AT4G24540.1 HORVU3Hr1G026650.1 AT4G18960.1 15805477
AT4G24540.1 HORVU4Hr1G077850.13 AT4G24540.1 15805477
AT4G24540.1 HORVU6Hr1G077300.8 AT4G24540.1 15805477
AT4G24540.1 HORVU7Hr1G036130.10 AT4G24540.1 15805477
AT4G24540.1 HORVU2Hr1G063800.7 AT5G60910.1 15805477
AT4G24540.1 HORVU5Hr1G095630.3 AT5G60910.1 15805477
AT4G24540.1 HORVU2Hr1G063800.7 AT5G60910.1 21798944
AT4G24540.1 HORVU5Hr1G095630.3 AT5G60910.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4D01G301100.1 Wheat nucleus 91.03 94.25
TraesCS4B01G302600.2 Wheat nucleus 91.03 93.42
TraesCS4A01G002600.1 Wheat nucleus 64.1 92.02
KXG40019 Sorghum nucleus 72.22 72.84
Os03t0186600-01 Rice nucleus 74.79 70.56
Zm00001d027957_P001 Maize nucleus 72.65 67.19
KRH62216 Soybean nucleus 16.24 57.58
VIT_03s0167g00100.t01 Wine grape nucleus 14.96 57.38
VIT_03s0017g00360.t01 Wine grape nucleus 14.96 55.56
VIT_00s0729g00010.t01 Wine grape nucleus 14.53 54.84
VIT_15s0024g01860.t01 Wine grape nucleus 14.96 53.85
Zm00001d027955_P001 Maize extracellular, golgi 40.17 52.22
HORVU6Hr1G077300.8 Barley nucleus 50.85 51.74
VIT_03s0017g00440.t01 Wine grape nucleus 20.51 51.06
GSMUA_Achr3P06800_001 Banana nucleus 49.57 50.66
GSMUA_Achr10P... Banana nucleus 48.29 49.56
VIT_00s0313g00070.t01 Wine grape nucleus 47.86 49.34
KRH74496 Soybean nucleus 46.58 48.02
PGSC0003DMT400041773 Potato nucleus 48.72 47.9
CDY13746 Canola nucleus 48.29 47.88
KRH69674 Soybean nucleus 46.15 47.58
AT2G22540.1 Thale cress nucleus 48.72 47.5
Bra030228.1-P Field mustard nucleus 47.86 47.46
PGSC0003DMT400024247 Potato nucleus 47.44 47.23
CDX89487 Canola nucleus 47.44 47.03
Bra038511.1-P Field mustard nucleus 48.29 46.89
VIT_03s0017g00450.t01 Wine grape nucleus 14.96 46.67
CDX76906 Canola nucleus 46.58 46.19
KRH52935 Soybean nucleus 45.73 45.73
KRH42097 Soybean nucleus 39.74 45.37
VIT_15s0107g00120.t01 Wine grape nucleus 34.19 44.44
CDY03445 Canola nucleus 41.03 43.44
KRH49819 Soybean nucleus 38.03 43.2
KRH10603 Soybean nucleus 37.61 42.31
CDY25607 Canola nucleus 31.62 42.29
Solyc11g010570.1.1 Tomato nucleus 47.86 42.26
VIT_15s0024g02000.t01 Wine grape nucleus 15.38 41.86
AT4G24540.1 Thale cress nucleus 38.89 41.36
KRH21764 Soybean nucleus 36.32 41.26
CDY11019 Canola nucleus 38.03 41.2
Bra019221.1-P Field mustard nucleus 38.03 41.2
PGSC0003DMT400083739 Potato nucleus 38.46 40.72
CDX92641 Canola nucleus 38.46 39.3
GSMUA_Achr9P15180_001 Banana nucleus 48.29 38.44
Solyc04g076280.2.1 Tomato vacuole 31.2 37.44
VIT_03s0167g00070.t01 Wine grape nucleus 28.63 36.61
KRH10606 Soybean nucleus 31.62 35.07
VIT_18s0001g07460.t01 Wine grape nucleus 47.86 35.0
HORVU7Hr1G036130.10 Barley nucleus, plastid 32.91 32.08
Solyc01g105800.2.1 Tomato nucleus 37.18 31.18
KRH21757 Soybean nucleus 31.2 29.44
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10UniProt:A0A287PRF7ncoils:CoilGO:GO:0000977GO:GO:0003674
GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719
GO:GO:0009742GO:GO:0009987GO:GO:0045944GO:GO:0046983EnsemblPlantsGene:HORVU4Hr1G077850EnsemblPlants:HORVU4Hr1G077850.13
InterPro:IPR002100InterPro:IPR002487InterPro:IPR036879InterPro:MADS_MEF2-likePFAM:PF00319PFAM:PF01486
PRINTS:PR00404PFscan:PS50066PFscan:PS51297PANTHER:PTHR11945PANTHER:PTHR11945:SF179SMART:SM00432
SUPFAM:SSF55455InterPro:TF_KboxInterPro:TF_MADSboxInterPro:TF_MADSbox_sfUniParc:UPI000B469D37:
Description
No Description!
Coordinates
chrchr4H:-:605650199..605668062
Molecular Weight (calculated)
26349.4 Da
IEP (calculated)
6.562
GRAVY (calculated)
-0.539
Length
234 amino acids
Sequence
(BLAST)
001: MAGKRERIAI RRIENLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLAVF SATGKLFQFA SSSMNQIIDR YNSHSKILKK VDEPSQLDLH EDSNCARLRD
101: ELAEASLWLQ QMRGEELQSL NVQQLQALEK SLESGLSSVL KTKSQKIMDQ ISELEKKRVQ LIEENARLKE QSDGLKLQAS KMEMQVAADP LVVVYDEGQS
201: SESVTNTSYP RPPLDTEDSS DTSLRLGLSL FNSK
Best Arabidopsis Sequence Match ( AT2G22540.3 )
(BLAST)
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
Arabidopsis Description
SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.