Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS4D01G301100.1 | Wheat | nucleus | 91.03 | 94.25 |
TraesCS4B01G302600.2 | Wheat | nucleus | 91.03 | 93.42 |
TraesCS4A01G002600.1 | Wheat | nucleus | 64.1 | 92.02 |
KXG40019 | Sorghum | nucleus | 72.22 | 72.84 |
Os03t0186600-01 | Rice | nucleus | 74.79 | 70.56 |
Zm00001d027957_P001 | Maize | nucleus | 72.65 | 67.19 |
KRH62216 | Soybean | nucleus | 16.24 | 57.58 |
VIT_03s0167g00100.t01 | Wine grape | nucleus | 14.96 | 57.38 |
VIT_03s0017g00360.t01 | Wine grape | nucleus | 14.96 | 55.56 |
VIT_00s0729g00010.t01 | Wine grape | nucleus | 14.53 | 54.84 |
VIT_15s0024g01860.t01 | Wine grape | nucleus | 14.96 | 53.85 |
Zm00001d027955_P001 | Maize | extracellular, golgi | 40.17 | 52.22 |
HORVU6Hr1G077300.8 | Barley | nucleus | 50.85 | 51.74 |
VIT_03s0017g00440.t01 | Wine grape | nucleus | 20.51 | 51.06 |
GSMUA_Achr3P06800_001 | Banana | nucleus | 49.57 | 50.66 |
GSMUA_Achr10P... | Banana | nucleus | 48.29 | 49.56 |
VIT_00s0313g00070.t01 | Wine grape | nucleus | 47.86 | 49.34 |
KRH74496 | Soybean | nucleus | 46.58 | 48.02 |
PGSC0003DMT400041773 | Potato | nucleus | 48.72 | 47.9 |
CDY13746 | Canola | nucleus | 48.29 | 47.88 |
KRH69674 | Soybean | nucleus | 46.15 | 47.58 |
AT2G22540.1 | Thale cress | nucleus | 48.72 | 47.5 |
Bra030228.1-P | Field mustard | nucleus | 47.86 | 47.46 |
PGSC0003DMT400024247 | Potato | nucleus | 47.44 | 47.23 |
CDX89487 | Canola | nucleus | 47.44 | 47.03 |
Bra038511.1-P | Field mustard | nucleus | 48.29 | 46.89 |
VIT_03s0017g00450.t01 | Wine grape | nucleus | 14.96 | 46.67 |
CDX76906 | Canola | nucleus | 46.58 | 46.19 |
KRH52935 | Soybean | nucleus | 45.73 | 45.73 |
KRH42097 | Soybean | nucleus | 39.74 | 45.37 |
VIT_15s0107g00120.t01 | Wine grape | nucleus | 34.19 | 44.44 |
CDY03445 | Canola | nucleus | 41.03 | 43.44 |
KRH49819 | Soybean | nucleus | 38.03 | 43.2 |
KRH10603 | Soybean | nucleus | 37.61 | 42.31 |
CDY25607 | Canola | nucleus | 31.62 | 42.29 |
Solyc11g010570.1.1 | Tomato | nucleus | 47.86 | 42.26 |
VIT_15s0024g02000.t01 | Wine grape | nucleus | 15.38 | 41.86 |
AT4G24540.1 | Thale cress | nucleus | 38.89 | 41.36 |
KRH21764 | Soybean | nucleus | 36.32 | 41.26 |
CDY11019 | Canola | nucleus | 38.03 | 41.2 |
Bra019221.1-P | Field mustard | nucleus | 38.03 | 41.2 |
PGSC0003DMT400083739 | Potato | nucleus | 38.46 | 40.72 |
CDX92641 | Canola | nucleus | 38.46 | 39.3 |
GSMUA_Achr9P15180_001 | Banana | nucleus | 48.29 | 38.44 |
Solyc04g076280.2.1 | Tomato | vacuole | 31.2 | 37.44 |
VIT_03s0167g00070.t01 | Wine grape | nucleus | 28.63 | 36.61 |
KRH10606 | Soybean | nucleus | 31.62 | 35.07 |
VIT_18s0001g07460.t01 | Wine grape | nucleus | 47.86 | 35.0 |
HORVU7Hr1G036130.10 | Barley | nucleus, plastid | 32.91 | 32.08 |
Solyc01g105800.2.1 | Tomato | nucleus | 37.18 | 31.18 |
KRH21757 | Soybean | nucleus | 31.2 | 29.44 |
Protein Annotations
MapMan:15.5.14 | Gene3D:3.40.1810.10 | UniProt:A0A287PRF7 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
GO:GO:0009742 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:HORVU4Hr1G077850 | EnsemblPlants:HORVU4Hr1G077850.13 |
InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 |
PRINTS:PR00404 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF179 | SMART:SM00432 |
SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000B469D37 | : |
Description
No Description!
Coordinates
chrchr4H:-:605650199..605668062
Molecular Weight (calculated)
26349.4 Da
IEP (calculated)
6.562
GRAVY (calculated)
-0.539
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGKRERIAI RRIENLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLAVF SATGKLFQFA SSSMNQIIDR YNSHSKILKK VDEPSQLDLH EDSNCARLRD
101: ELAEASLWLQ QMRGEELQSL NVQQLQALEK SLESGLSSVL KTKSQKIMDQ ISELEKKRVQ LIEENARLKE QSDGLKLQAS KMEMQVAADP LVVVYDEGQS
201: SESVTNTSYP RPPLDTEDSS DTSLRLGLSL FNSK
101: ELAEASLWLQ QMRGEELQSL NVQQLQALEK SLESGLSSVL KTKSQKIMDQ ISELEKKRVQ LIEENARLKE QSDGLKLQAS KMEMQVAADP LVVVYDEGQS
201: SESVTNTSYP RPPLDTEDSS DTSLRLGLSL FNSK
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
Arabidopsis Description
SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.