Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038511.1-P | Field mustard | nucleus | 92.5 | 92.12 |
| CDY13746 | Canola | nucleus | 90.42 | 91.95 |
| Bra030228.1-P | Field mustard | nucleus | 89.17 | 90.68 |
| CDX76906 | Canola | nucleus | 89.17 | 90.68 |
| CDX89487 | Canola | nucleus | 88.33 | 89.83 |
| CDY25607 | Canola | nucleus | 64.17 | 88.0 |
| Zm00001d044899_P001 | Maize | nucleus | 19.58 | 66.2 |
| GSMUA_Achr10P... | Banana | nucleus | 56.25 | 59.21 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 54.17 | 56.77 |
| Os02t0761000-01 | Rice | nucleus | 53.75 | 56.58 |
| Zm00001d018142_P001 | Maize | nucleus | 51.25 | 55.66 |
| Os06t0217300-01 | Rice | nucleus | 51.67 | 55.61 |
| AT4G24540.1 | Thale cress | nucleus | 50.83 | 55.45 |
| TraesCS6B01G343900.1 | Wheat | cytosol | 52.5 | 55.26 |
| TraesCS6A01G313800.1 | Wheat | nucleus | 52.5 | 55.26 |
| Zm00001d052180_P001 | Maize | nucleus | 50.83 | 55.2 |
| TraesCS6D01G293200.1 | Wheat | nucleus | 52.08 | 54.82 |
| KXG31156 | Sorghum | nucleus | 51.67 | 54.39 |
| HORVU6Hr1G077300.8 | Barley | nucleus | 51.25 | 53.48 |
| TraesCS7D01G176700.1 | Wheat | nucleus | 48.33 | 51.33 |
| EER88077 | Sorghum | nucleus | 47.08 | 50.22 |
| TraesCS4D01G301100.1 | Wheat | nucleus | 47.08 | 50.0 |
| TraesCS4B01G302600.2 | Wheat | nucleus | 46.67 | 49.12 |
| TraesCS7A01G175200.2 | Wheat | nucleus | 48.75 | 48.75 |
| HORVU4Hr1G077850.13 | Barley | nucleus | 47.5 | 48.72 |
| KXG40019 | Sorghum | nucleus | 47.08 | 48.71 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 57.5 | 46.94 |
| TraesCS7B01G080300.2 | Wheat | cytosol | 47.08 | 46.89 |
| Os03t0186600-01 | Rice | nucleus | 47.92 | 46.37 |
| TraesCS4A01G002600.1 | Wheat | nucleus | 31.25 | 46.01 |
| Zm00001d027957_P001 | Maize | nucleus | 47.92 | 45.45 |
| Zm00001d027955_P001 | Maize | extracellular, golgi | 27.08 | 36.11 |
| HORVU7Hr1G036130.10 | Barley | nucleus, plastid | 29.58 | 29.58 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:816787 | UniProt:A0A178VTB6 | UniProt:A7XFU1 | ProteinID:AAD22365.1 |
| ProteinID:AEC07320.1 | ProteinID:AEC07321.1 | EMBL:AF211171 | ProteinID:AFU85626.1 | ProteinID:AFU85627.1 | ProteinID:AFU85628.1 |
| ProteinID:AFU85629.1 | ProteinID:AFU85630.1 | ProteinID:AFU85631.1 | ProteinID:AFU85633.1 | ProteinID:AFU85634.1 | ProteinID:AFU85635.1 |
| ProteinID:AFU85637.1 | ProteinID:AFU85638.1 | ProteinID:AFU85639.1 | ProteinID:AFU85640.1 | ProteinID:AFU85641.1 | ProteinID:ANM62426.1 |
| ArrayExpress:AT2G22540 | EnsemblPlantsGene:AT2G22540 | RefSeq:AT2G22540 | TAIR:AT2G22540 | RefSeq:AT2G22540-TAIR-G | EnsemblPlants:AT2G22540.1 |
| TAIR:AT2G22540.1 | EMBL:BT033098 | ncoils:Coil | EMBL:EU078686 | EMBL:EU078687 | GO:GO:0000003 |
| GO:GO:0000900 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006412 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009266 | GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009910 | GO:GO:0009987 | GO:GO:0017148 | GO:GO:0019538 | GO:GO:0030154 | GO:GO:0043565 |
| GO:GO:0045182 | GO:GO:0045892 | GO:GO:0045944 | GO:GO:0046983 | GO:GO:0048438 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | RefSeq:NP_001154528.1 | RefSeq:NP_001324584.1 | RefSeq:NP_179840.2 |
| ProteinID:OAP09056.1 | PFAM:PF00319 | PFAM:PF01486 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF179 | UniProt:Q9FVC1 | SMART:SM00432 | SUPFAM:SSF55455 | Symbol:SVP |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00000354BF | : | : |
Description
SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
Coordinates
chr2:+:9579647..9583901
Molecular Weight (calculated)
26897.8 Da
IEP (calculated)
5.275
GRAVY (calculated)
-0.714
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.