Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030228.1-P | Field mustard | nucleus | 100.0 | 74.15 |
| CDX89487 | Canola | nucleus | 98.86 | 73.31 |
| CDY13746 | Canola | nucleus | 90.29 | 66.95 |
| CDX76906 | Canola | nucleus | 88.0 | 65.25 |
| AT2G22540.1 | Thale cress | nucleus | 88.0 | 64.17 |
| TraesCS4A01G002600.1 | Wheat | nucleus | 42.29 | 45.4 |
| GSMUA_Achr10P... | Banana | nucleus | 46.86 | 35.96 |
| Os06t0217300-01 | Rice | nucleus | 45.14 | 35.43 |
| CDY03445 | Canola | nucleus | 43.43 | 34.39 |
| Zm00001d018142_P001 | Maize | nucleus | 42.86 | 33.94 |
| Os02t0761000-01 | Rice | nucleus | 43.43 | 33.33 |
| CDY11019 | Canola | nucleus | 41.14 | 33.33 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 43.43 | 33.19 |
| TraesCS4B01G302600.2 | Wheat | nucleus | 42.86 | 32.89 |
| Zm00001d027955_P001 | Maize | extracellular, golgi | 33.71 | 32.78 |
| TraesCS4D01G301100.1 | Wheat | nucleus | 42.29 | 32.74 |
| KXG40019 | Sorghum | nucleus | 42.86 | 32.33 |
| Zm00001d052180_P001 | Maize | nucleus | 40.57 | 32.13 |
| HORVU4Hr1G077850.13 | Barley | nucleus | 42.29 | 31.62 |
| KXG31156 | Sorghum | nucleus | 41.14 | 31.58 |
| CDX92641 | Canola | nucleus | 41.14 | 31.44 |
| TraesCS6A01G313800.1 | Wheat | nucleus | 40.57 | 31.14 |
| TraesCS6B01G343900.1 | Wheat | cytosol | 40.57 | 31.14 |
| Os03t0186600-01 | Rice | nucleus | 44.0 | 31.05 |
| TraesCS6D01G293200.1 | Wheat | nucleus | 40.0 | 30.7 |
| HORVU6Hr1G077300.8 | Barley | nucleus | 40.0 | 30.43 |
| Zm00001d027957_P001 | Maize | nucleus | 42.86 | 29.64 |
| EER88077 | Sorghum | nucleus | 37.14 | 28.89 |
| TraesCS7D01G176700.1 | Wheat | nucleus | 37.14 | 28.76 |
| TraesCS7A01G175200.2 | Wheat | nucleus | 37.14 | 27.08 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 45.14 | 26.87 |
| HORVU7Hr1G036130.10 | Barley | nucleus, plastid | 35.43 | 25.83 |
| TraesCS7B01G080300.2 | Wheat | cytosol | 35.43 | 25.73 |
| Zm00001d044899_P001 | Maize | nucleus | 1.71 | 4.23 |
Protein Annotations
| MapMan:35.1 | GO:A0A078GKE4 | UniProt:A0A078GKE4 | EnsemblPlants:CDY25607 | ProteinID:CDY25607 | ProteinID:CDY25607.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00032884001 | InterPro:IPR002487 | PFAM:PF01486 | PFscan:PS51297 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF179 | InterPro:TF_Kbox | UniParc:UPI0004EDEF42 | SEG:seg | : | : |
Description
BnaA04g12990DBnaA04g12990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKE4]
Coordinates
chrLK032177:+:235886..238141
Molecular Weight (calculated)
19898.3 Da
IEP (calculated)
4.809
GRAVY (calculated)
-1.043
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MREVLERHNL QSKNLEKLDQ PSLELQLVEN SDNSRLSKEI ADKSHQLRQM RGEELQGLNI EELQQLEKAL EAGLTRVIET KSEKIMSEIS DLQRKGMKLM
101: DENKRLRQHG TQLTEENERL GKQIYNNMHE RYGGVESEKT AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLG
101: DENKRLRQHG TQLTEENERL GKQIYNNMHE RYGGVESEKT AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLG
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG
Arabidopsis Description
SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.