CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76906
CDX89487
CDY13746
CDY25607

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10140.1	CDX76906	AT2G22540.1	19011118
AT5G10140.1	CDX89487	AT2G22540.1	19011118
AT5G10140.1	CDY13746	AT2G22540.1	19011118
AT5G10140.1	CDY25607	AT2G22540.1	19011118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022771.1-P	Field mustard	nucleus	72.96	100.0
CDX85776	Canola	nucleus	83.16	83.16
CDY40081	Canola	nucleus	80.61	80.61
CDX69859	Canola	nucleus	80.61	80.2
CDX81163	Canola	nucleus	80.61	80.2
CDY21642	Canola	nucleus	80.1	79.7
AT5G10140.1	Thale cress	nucleus	79.59	79.59
CDX78370	Canola	nucleus	79.59	79.19
CDY24038	Canola	nucleus	82.14	76.3
CDY14535	Canola	cytosol, nucleus, plastid	30.1	71.08
CDY21638	Canola	nucleus	80.61	69.0
CDY33995	Canola	nucleus	61.73	63.02
CDY33990	Canola	nucleus	60.71	61.98
CDY31290	Canola	nucleus	60.2	61.46
CDY31286	Canola	nucleus	57.65	56.78
CDY31289	Canola	nucleus	56.12	55.28
CDY08824	Canola	nucleus	56.12	54.73
CDY33987	Canola	nucleus, plastid	22.96	40.91
KRH58791	Soybean	nucleus	36.73	36.0
Solyc12g087830.1.1	Tomato	nucleus	36.22	35.86
KRH42691	Soybean	nucleus	33.67	35.48
CDY08825	Canola	nucleus	59.18	33.82
Solyc05g015720.1.1	Tomato	nucleus	19.39	29.01
PGSC0003DMT400045804	Potato	nucleus	31.12	27.11
Solyc12g087810.1.1	Tomato	nucleus	18.88	26.43

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:AFU61569.1	unigene:Bna.2247	EnsemblPlants:CDX84867	ProteinID:CDX84867
ProteinID:CDX84867.1	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00142187001	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF172	GO:Q8W001
UniProt:Q8W001	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
UniParc:UPI00000A57E8	SEG:seg	:	:	:	:

Description

BnaA03g13630DBnaA03g13630D protein [Source:UniProtKB/TrEMBL;Acc:Q8W001]

Coordinates

chrLK031838:-:1636369..1641618

Molecular Weight (calculated)

22003.4 Da

IEP (calculated)

5.437

GRAVY (calculated)

-0.394

Length

196 amino acids

Sequence
(BLAST)

001: MGRKKLEIKR IEKNSSRQVT FCKRRNGLIE KARQLSVLCE ASVGLLVVSA SDKLYSFSSG DRLEKILDRY GKKHADDLNA LDLQSKSLNY SSHHELLELV
101: ESKLVESIDD VSVDSLVELE DHLETALSVT RARKAELMLK LVESLKEKEN LLKEENQVLA SQIEKKNLEG AEADNIEMSS GQISDINLPV TLPLLN

Best Arabidopsis Sequence Match ( AT5G10140.1 )
(BLAST)

001: MGRKKLEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYSFSSG DNLVKILDRY GKQHADDLKA LDHQSKALNY GSHYELLELV
101: DSKLVGSNVK NVSIDALVQL EEHLETALSV TRAKKTELML KLVENLKEKE KMLKEENQVL ASQMENNHHV GAEAEMEMSP AGQISDNLPV TLPLLN

Arabidopsis Description

FLCAt5g10140 [Source:UniProtKB/TrEMBL;Acc:Q5Q9J1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.