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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • nucleus 5
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc12g087810.1.1 Tomato nucleus 49.49 70.0
PGSC0003DMT400045804 Potato nucleus 63.13 55.56
Solyc05g015720.1.1 Tomato nucleus 29.29 44.27
CDY14535 Canola cytosol, nucleus, plastid 18.18 43.37
CDY31286 Canola nucleus 40.4 40.2
Bra031884.1-P Field mustard nucleus 40.4 40.2
CDY33990 Canola nucleus 38.38 39.58
CDY31290 Canola nucleus 38.38 39.58
CDY33995 Canola nucleus 37.88 39.06
AT5G65060.1 Thale cress nucleus 38.38 38.78
Bra024351.1-P Field mustard nucleus 38.89 38.5
CDX85776 Canola nucleus 37.88 38.27
Bra028599.1-P Field mustard nucleus 37.88 38.27
Bra031888.1-P Field mustard nucleus 34.34 38.2
CDY08824 Canola nucleus 38.38 37.81
CDY40081 Canola nucleus 37.37 37.76
CDX69859 Canola nucleus 37.37 37.56
CDY21642 Canola nucleus 37.37 37.56
Bra022771.1-P Field mustard nucleus 26.77 37.06
CDX78370 Canola nucleus 36.87 37.06
CDX81163 Canola nucleus 36.87 37.06
Bra006051.1-P Field mustard nucleus 36.87 37.06
Bra024350.1-P Field mustard nucleus 36.36 36.73
AT5G65050.3 Thale cress nucleus 36.36 36.73
Bra009055.1-P Field mustard nucleus 37.88 36.41
CDX84867 Canola nucleus 35.86 36.22
AT5G10140.1 Thale cress nucleus 35.86 36.22
CDY31289 Canola nucleus 36.36 36.18
AT5G65070.3 Thale cress nucleus 41.41 35.34
AT1G77080.8 Thale cress nucleus 38.89 34.53
AT5G65080.2 Thale cress nucleus 35.35 34.31
CDY21638 Canola nucleus 36.87 31.88
CDY24038 Canola nucleus 32.83 30.81
KRH42691 Soybean nucleus 28.79 30.65
KRH58791 Soybean nucleus 30.3 30.0
CDY33987 Canola nucleus, plastid 16.67 30.0
Bra031886.1-P Field mustard nucleus 34.85 27.6
CDY08825 Canola nucleus 36.36 20.99
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10ncoils:CoilGO:GO:0000977GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0045944GO:GO:0046983InterPro:IPR002100
InterPro:IPR002487InterPro:IPR036879UniProt:K4DGK4InterPro:MADS_MEF2-likePFAM:PF00319PFAM:PF01486
PRINTS:PR00404PFscan:PS50066PFscan:PS51297PANTHER:PTHR11945PANTHER:PTHR11945:SF241SMART:SM00432
SUPFAM:SSF55455EnsemblPlantsGene:Solyc12g087830.1EnsemblPlants:Solyc12g087830.1.1InterPro:TF_KboxInterPro:TF_MADSboxInterPro:TF_MADSbox_sf
UniParc:UPI000276A83ASEG:seg::::
Description
No Description!
Coordinates
chr12:+:63325365..63336973
Molecular Weight (calculated)
22644.7 Da
IEP (calculated)
8.966
GRAVY (calculated)
-0.434
Length
198 amino acids
Sequence
(BLAST)
001: MGRRKVEIKR IQDKNCRQVA FCKRRKGLLK KAKEISILCD VDVAVVIISN RGRLHEFSSN NSMTAMLRRY ESHVGAEKEI NAEIQVAEVS GFTTMGELLQ
101: TTERQLEETN ADGLTLTDLI HLENELQTAL IHLRARKTHL MLESAKVLHE KEKLLLEEKK HLEDNIASIK KNTKVNEMSD LPAPHMICGQ QKVTLNFF
Best Arabidopsis Sequence Match ( AT5G65060.1 )
(BLAST)
001: MGRRKVEIKR IENKSSRQVT FSKRRKGLIE KARQLSILCE SSIAVVAVSG SGKLYDSASG DNMSKIIDRY EIHHADELKA LDLAEKIRNY LPHKELLEIV
101: QSKLEESNVD NVSVDSLISM EEQLETALSV IRAKKTELMM EDMKSLQERE KLLIEENQIL ASQVGKKTFL VIEGDRGMSR ENGSGNKVPE TLSLLK
Arabidopsis Description
MAF3Agamous-like MADS-box protein AGL70 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSR7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.