Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31286 | Canola | nucleus | 64.71 | 66.33 |
| Bra031884.1-P | Field mustard | nucleus | 64.22 | 65.83 |
| AT5G65060.1 | Thale cress | nucleus | 58.33 | 60.71 |
| AT5G65050.3 | Thale cress | nucleus | 56.37 | 58.67 |
| AT5G65070.3 | Thale cress | nucleus | 62.25 | 54.74 |
| AT1G77080.8 | Thale cress | nucleus | 56.86 | 52.02 |
| AT5G10140.1 | Thale cress | nucleus | 49.02 | 51.02 |
| KRH42691 | Soybean | nucleus | 35.78 | 39.25 |
| KRH58791 | Soybean | nucleus | 34.8 | 35.5 |
| Solyc12g087830.1.1 | Tomato | nucleus | 34.31 | 35.35 |
| Solyc05g015720.1.1 | Tomato | nucleus | 21.08 | 32.82 |
| Solyc12g087810.1.1 | Tomato | nucleus | 19.12 | 27.86 |
| PGSC0003DMT400045804 | Potato | nucleus | 27.94 | 25.33 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:836632 | UniProt:A0A2H1ZE96 | ProteinID:AED97999.2 | ArrayExpress:AT5G65080 |
| EnsemblPlantsGene:AT5G65080 | RefSeq:AT5G65080 | TAIR:AT5G65080 | RefSeq:AT5G65080-TAIR-G | EnsemblPlants:AT5G65080.2 | TAIR:AT5G65080.2 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | Symbol:MAF5 | RefSeq:NP_001078799.2 |
| PFAM:PF00319 | PFAM:PF01486 | PO:PO:0000293 | PO:PO:0004507 | PO:PO:0007098 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PRINTS:PR00404 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF340 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000009E853 | SEG:seg |
Description
MAF5K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G65080]
Coordinates
chr5:+:25997594..26002330
Molecular Weight (calculated)
23316.4 Da
IEP (calculated)
10.246
GRAVY (calculated)
-0.539
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MCRKSEAMGR RRVEIKRIEN KSSRQVTFCK RRNGLMEKAR QLSILCGSSV ALFIVSSTGK LYNSSSGDRV VYVSWKRKNF TIFLSWQDLE DKTQDYLSHK
101: ELLEIVQRKI EEAKGDNVSI ESLISMEEQL KSALSVIRAR KTELLMELVK NLQDKEKLLK EKNKVLASEV GKLKKILETG DERAVMSPEN SSGHSPPETL
201: PLLK
101: ELLEIVQRKI EEAKGDNVSI ESLISMEEQL KSALSVIRAR KTELLMELVK NLQDKEKLLK EKNKVLASEV GKLKKILETG DERAVMSPEN SSGHSPPETL
201: PLLK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.