CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58791	Soybean	nucleus	70.97	66.0
CDY14535	Canola	cytosol, nucleus, plastid	22.04	49.4
CDY21642	Canola	nucleus	39.25	37.06
CDX69859	Canola	nucleus	39.25	37.06
CDY40081	Canola	nucleus	38.71	36.73
Bra022771.1-P	Field mustard	nucleus	27.96	36.36
CDX85776	Canola	nucleus	38.17	36.22
Bra028599.1-P	Field mustard	nucleus	38.17	36.22
Bra006051.1-P	Field mustard	nucleus	38.17	36.04
CDX78370	Canola	nucleus	38.17	36.04
Bra009055.1-P	Field mustard	nucleus	39.78	35.92
AT5G65080.2	Thale cress	nucleus	39.25	35.78
AT5G10140.1	Thale cress	nucleus	37.63	35.71
Bra031884.1-P	Field mustard	nucleus	37.63	35.18
CDY31286	Canola	nucleus	37.63	35.18
CDX81163	Canola	nucleus	37.1	35.03
Bra024351.1-P	Field mustard	nucleus	36.56	34.0
CDY31290	Canola	nucleus	34.95	33.85
Bra031888.1-P	Field mustard	nucleus	32.26	33.71
CDX84867	Canola	nucleus	35.48	33.67
AT5G65050.3	Thale cress	nucleus	35.48	33.67
CDY08824	Canola	nucleus	36.02	33.33
CDY33995	Canola	nucleus	34.41	33.33
CDY31289	Canola	nucleus	35.48	33.17
CDY33990	Canola	nucleus	33.87	32.81
Bra024350.1-P	Field mustard	nucleus	34.41	32.65
AT5G65060.1	Thale cress	nucleus	34.41	32.65
CDY21638	Canola	nucleus	39.25	31.88
CDY24038	Canola	nucleus	33.33	29.38
AT5G65070.3	Thale cress	nucleus	36.56	29.31
Solyc12g087830.1.1	Tomato	nucleus	30.65	28.79
AT1G77080.8	Thale cress	nucleus	34.41	28.7
Bra031886.1-P	Field mustard	nucleus	35.48	26.4
PGSC0003DMT400045804	Potato	nucleus	29.03	24.0
Solyc05g015720.1.1	Tomato	nucleus	14.52	20.61
CDY08825	Canola	nucleus	35.48	19.24
CDY33987	Canola	nucleus, plastid	11.29	19.09
Solyc12g087810.1.1	Tomato	nucleus	13.44	17.86

Protein Annotations

EntrezGene:100778392	MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:ACUP02004822	ncoils:Coil	UniProt:G3E7M7
EnsemblPlantsGene:GLYMA_08G105400	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EMBL:HQ636609	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	EnsemblPlants:KRH42691	ProteinID:KRH42691	ProteinID:KRH42691.1	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF172
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0000038C7D

Description

hypothetical protein

Coordinates

chr8:-:8113072..8125881

Molecular Weight (calculated)

20965.5 Da

IEP (calculated)

8.946

GRAVY (calculated)

-0.301

Length

186 amino acids

Sequence
(BLAST)

001: MGKKKVEIKR IENKSTRQIT FSKRRNGLMK KARELSILCD AKVALLIFSS TGKLYELCNG DSLAEVVQQY WDHLGASGTD TKSQELCFEI ADIWSGSAFS
101: QMIKRHFGVS ELEHLSVSDL MELEKLTHAA LSRIRSAKMR LMMESVVNLK KKIEALEKTN DVNNVVTRSI DCDQTDGVTH NLFPGL

Best Arabidopsis Sequence Match ( AT5G65080.3 )
(BLAST)

001: MCRKSEAMGR RRVEIKRIEN KSSRQVTFCK RRNGLMEKAR QLSILCGSSV ALFIVSSTGK LYNSSSGDSM AKIISRFKIQ QADDPETLDL EDKTQDYLSH
101: KELLEIVQRK IEEAKGDNVS IESLISMEEQ LKSALSVIRA RKTELLMELV KNLQDKVGKL KKILETGDER AVMSPENSSG HSPPETLPLL K

Arabidopsis Description

MAF5K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G65080]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.