Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g087830.1.1 | Tomato | nucleus | 70.0 | 49.49 |
| Solyc05g015720.1.1 | Tomato | nucleus | 45.71 | 48.85 |
| CDY33987 | Canola | nucleus, plastid | 22.86 | 29.09 |
| PGSC0003DMT400045804 | Potato | nucleus | 44.29 | 27.56 |
| CDY33995 | Canola | nucleus | 29.29 | 21.35 |
| CDY33990 | Canola | nucleus | 29.29 | 21.35 |
| CDY31290 | Canola | nucleus | 29.29 | 21.35 |
| CDY40081 | Canola | nucleus | 29.29 | 20.92 |
| CDX85776 | Canola | nucleus | 28.57 | 20.41 |
| Bra028599.1-P | Field mustard | nucleus | 28.57 | 20.41 |
| Bra024350.1-P | Field mustard | nucleus | 28.57 | 20.41 |
| CDY21642 | Canola | nucleus | 28.57 | 20.3 |
| CDX69859 | Canola | nucleus | 28.57 | 20.3 |
| Bra024351.1-P | Field mustard | nucleus | 28.57 | 20.0 |
| CDX81163 | Canola | nucleus | 27.86 | 19.8 |
| Bra009055.1-P | Field mustard | nucleus | 28.57 | 19.42 |
| CDY08824 | Canola | nucleus | 27.86 | 19.4 |
| AT5G65060.1 | Thale cress | nucleus | 27.14 | 19.39 |
| CDX78370 | Canola | nucleus | 27.14 | 19.29 |
| Bra006051.1-P | Field mustard | nucleus | 27.14 | 19.29 |
| AT5G65080.2 | Thale cress | nucleus | 27.86 | 19.12 |
| CDX84867 | Canola | nucleus | 26.43 | 18.88 |
| Bra031884.1-P | Field mustard | nucleus | 26.43 | 18.59 |
| CDY31286 | Canola | nucleus | 26.43 | 18.59 |
| Bra031888.1-P | Field mustard | nucleus | 23.57 | 18.54 |
| AT5G65050.3 | Thale cress | nucleus | 25.71 | 18.37 |
| CDY31289 | Canola | nucleus | 25.71 | 18.09 |
| AT1G77080.8 | Thale cress | nucleus | 28.57 | 17.94 |
| AT5G10140.1 | Thale cress | nucleus | 25.0 | 17.86 |
| CDY21638 | Canola | nucleus | 28.57 | 17.47 |
| AT5G65070.3 | Thale cress | nucleus | 27.86 | 16.81 |
| KRH58791 | Soybean | nucleus | 23.57 | 16.5 |
| CDY24038 | Canola | nucleus | 22.14 | 14.69 |
| KRH42691 | Soybean | nucleus | 17.86 | 13.44 |
| Bra022771.1-P | Field mustard | nucleus | 13.57 | 13.29 |
| Bra031886.1-P | Field mustard | nucleus | 23.57 | 13.2 |
| CDY08825 | Canola | nucleus | 28.57 | 11.66 |
| CDY14535 | Canola | cytosol, nucleus, plastid | 2.86 | 4.82 |
Protein Annotations
| MapMan:35.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR002487 | UniProt:K4DGK2 | PFAM:PF01486 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF244 | EnsemblPlantsGene:Solyc12g087810.1 | EnsemblPlants:Solyc12g087810.1.1 | InterPro:TF_Kbox | UniParc:UPI000276A838 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:63309054..63311346
Molecular Weight (calculated)
16126.2 Da
IEP (calculated)
6.155
GRAVY (calculated)
-0.637
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQRYKSHVE AEKEISTEIQ VAEHSKYSGF ITMGKLLQTT ERQLEETNDD VLTVTDLIHL ENELQTALIQ LRSRKTHLLL ESAKGLHEKE KLLQEEKKHL
101: EDNIASIKKN TKVNEMSTDF ADFPAPHSIS GQQRITLNFL
101: EDNIASIKKN TKVNEMSTDF ADFPAPHSIS GQQRITLNFL
001: MHFCFISSIS KIIDRYEIQH ADELRALDLE EKIQNYLPHK ELLETVQSKL EEPNVDNVSV DSLISLEEQL ETALSVSRAR KAELMMEYIE SLKEKEKLLR
101: EENQVLASQM GKNTLLATDD ERGMFPGSSS GNKIPETLPL LN
101: EENQVLASQM GKNTLLATDD ERGMFPGSSS GNKIPETLPL LN
Arabidopsis Description
MAF1K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT1G77080]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.