CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031884.1-P	Field mustard	nucleus	99.5	99.5
CDY31289	Canola	nucleus	74.87	74.87
CDY14535	Canola	cytosol, nucleus, plastid	31.16	74.7
CDY08824	Canola	nucleus	71.36	70.65
CDY33990	Canola	nucleus	65.33	67.71
CDY33995	Canola	nucleus	65.33	67.71
CDY31290	Canola	nucleus	64.32	66.67
AT5G65080.2	Thale cress	nucleus	66.33	64.71
CDY33987	Canola	nucleus, plastid	34.17	61.82
CDX84867	Canola	nucleus	56.78	57.65
CDY21642	Canola	nucleus	56.78	57.36
CDX69859	Canola	nucleus	56.78	57.36
CDX85776	Canola	nucleus	56.28	57.14
CDY40081	Canola	nucleus	53.77	54.59
CDX78370	Canola	nucleus	53.77	54.31
CDX81163	Canola	nucleus	53.77	54.31
CDY21638	Canola	nucleus	56.28	48.91
CDY24038	Canola	nucleus	49.75	46.92
Solyc12g087830.1.1	Tomato	nucleus	40.2	40.4
KRH58791	Soybean	nucleus	39.7	39.5
CDY08825	Canola	nucleus	67.84	39.36
KRH42691	Soybean	nucleus	35.18	37.63
Solyc05g015720.1.1	Tomato	nucleus	22.11	33.59
PGSC0003DMT400045804	Potato	nucleus	32.16	28.44
Solyc12g087810.1.1	Tomato	nucleus	18.59	26.43

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078H0K5	UniProt:A0A078H0K5	EnsemblPlants:CDY31286	ProteinID:CDY31286
ProteinID:CDY31286.1	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00047451001	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF172	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EEE1B0	SEG:seg

Description

BnaA02g34550DBnaA02g34550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0K5]

Coordinates

chrLK032270:-:37156..47168

Molecular Weight (calculated)

22783.8 Da

IEP (calculated)

10.155

GRAVY (calculated)

-0.558

Length

199 amino acids

Sequence
(BLAST)

001: MGRRKVEIKR IENKSSRQVT FCKRRNGLMK KARQLSILCE SSVALLIVSS TGKLYSSSSG DSMAKILTRY KTQHADELKT VDLAEKTRNY LSHEELLEIV
101: QCKLEEAKND NMSIESLISL EEQFKSALSV TRARKAELMM EFLKTLQEKE KLLREENKVL ASQLTKMKKS RFLEAEDERA MSLAKSFGNN TPETLSLLK

Best Arabidopsis Sequence Match ( AT5G65070.1 )
(BLAST)

001: MGRRKVEIKR IENKSSRQVT FCKRRNGLME KARQLSILCE SSVALIIISA TGRLYSFSSG DSMAKILSRY ELEQADDLKT LDLEEKTLNY LSHKELLETI
101: QCKIEEAKSD NVSIDCLKSL EEQLKTALSV TRARKTELMM ELVKTHQEKE KLLREENQSL TNQLIKMGKM KKSVEAEDAR AMSPESSSDN KPPETLLLLK

Arabidopsis Description

MAF4K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KGH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.