Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10140.1 | CDX76906 | AT2G22540.1 | 19011118 |
| AT5G10140.1 | CDX89487 | AT2G22540.1 | 19011118 |
| AT5G10140.1 | CDY13746 | AT2G22540.1 | 19011118 |
| AT5G10140.1 | CDY25607 | AT2G22540.1 | 19011118 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028599.1-P | Field mustard | nucleus | 95.41 | 95.41 |
| CDX85776 | Canola | nucleus | 95.41 | 95.41 |
| CDX69859 | Canola | nucleus | 84.69 | 84.26 |
| CDX78370 | Canola | nucleus | 84.69 | 84.26 |
| CDX81163 | Canola | nucleus | 84.69 | 84.26 |
| CDY21642 | Canola | nucleus | 84.69 | 84.26 |
| AT5G10140.1 | Thale cress | nucleus | 83.16 | 83.16 |
| CDX84867 | Canola | nucleus | 80.61 | 80.61 |
| CDY14535 | Canola | cytosol, nucleus, plastid | 31.12 | 73.49 |
| CDY21638 | Canola | nucleus | 84.18 | 72.05 |
| CDY33995 | Canola | nucleus | 62.76 | 64.06 |
| CDY24038 | Canola | nucleus | 68.37 | 63.51 |
| CDY33990 | Canola | nucleus | 61.73 | 63.02 |
| CDY31290 | Canola | nucleus | 61.22 | 62.5 |
| CDY31289 | Canola | nucleus | 55.61 | 54.77 |
| CDY31286 | Canola | nucleus | 54.59 | 53.77 |
| CDY08824 | Canola | nucleus | 54.59 | 53.23 |
| KRH42691 | Soybean | nucleus | 36.73 | 38.71 |
| CDY33987 | Canola | nucleus, plastid | 21.43 | 38.18 |
| KRH58791 | Soybean | nucleus | 38.78 | 38.0 |
| Solyc12g087830.1.1 | Tomato | nucleus | 37.76 | 37.37 |
| CDY08825 | Canola | nucleus | 59.69 | 34.11 |
| Solyc05g015720.1.1 | Tomato | nucleus | 19.9 | 29.77 |
| Solyc12g087810.1.1 | Tomato | nucleus | 20.92 | 29.29 |
| PGSC0003DMT400045804 | Potato | nucleus | 32.14 | 28.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ProteinID:ATN24200.1 | unigene:Bna.2246 | EnsemblPlants:CDY40081 | ProteinID:CDY40081 |
| ProteinID:CDY40081.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00068991001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF172 | GO:Q8W002 |
| UniProt:Q8W002 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf |
| UniParc:UPI00000A0FB0 | SEG:seg | : | : | : | : |
Description
BnaC02g00490DBnaC02g00490D protein [Source:UniProtKB/TrEMBL;Acc:Q8W002]
Coordinates
chrLK032463:-:95417..98994
Molecular Weight (calculated)
21801.2 Da
IEP (calculated)
7.572
GRAVY (calculated)
-0.435
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKKLEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYNFSAG DDLVKIVDRY GKQHADDRKA LDLQSEAPKY GSHHELLELV
101: ESKLVESNSD VSVDSLVQLE NHLETALSVT RARKTELLLK LVDSLKEKEK LLKEENQGLA SQMEKNNLAG AEADKMEVSP GQISDINCPV TLPLLY
101: ESKLVESNSD VSVDSLVQLE NHLETALSVT RARKTELLLK LVDSLKEKEK LLKEENQGLA SQMEKNNLAG AEADKMEVSP GQISDINCPV TLPLLY
001: MGRRKIEIKR IENKSSRQVT FSKRRNGLID KARQLSILCE SSVAVVVVSA SGKLYDSSSG DDISKIIDRY EIQHADELRA LDLEEKIQNY LPHKELLETV
101: QSKLEEPNVD NVSVDSLISL EEQLETALSV SRARKAELMM EYIESLKEKE KLLREENQVL ASQMGKNTLL ATDDERGMFP GSSSGNKIPE TLPLLN
101: QSKLEEPNVD NVSVDSLISL EEQLETALSV SRARKAELMM EYIESLKEKE KLLREENQVL ASQMGKNTLL ATDDERGMFP GSSSGNKIPE TLPLLN
Arabidopsis Description
MAF1K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT1G77080]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.