CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024350.1-P	Field mustard	nucleus	52.48	91.84
CDY14535	Canola	cytosol, nucleus, plastid	22.16	91.57
CDY33995	Canola	nucleus	39.07	69.79
CDY31290	Canola	nucleus	39.07	69.79
AT5G65060.1	Thale cress	nucleus	39.36	68.88
CDY33990	Canola	nucleus	38.48	68.75
AT5G65050.3	Thale cress	nucleus	38.78	67.86
CDY31286	Canola	nucleus	39.36	67.84
CDY31289	Canola	nucleus	38.19	65.83
CDY08824	Canola	nucleus	36.73	62.69
CDX85776	Canola	nucleus	34.99	61.22
AT1G77080.8	Thale cress	nucleus	39.65	60.99
CDY40081	Canola	nucleus	34.11	59.69
CDX84867	Canola	nucleus	33.82	59.18
CDY21642	Canola	nucleus	33.82	58.88
CDX69859	Canola	nucleus	33.82	58.88
CDX81163	Canola	nucleus	32.65	56.85
CDX78370	Canola	nucleus	32.36	56.35
CDY33987	Canola	nucleus, plastid	16.91	52.73
CDY21638	Canola	nucleus	34.4	51.53
CDY24038	Canola	nucleus	28.86	46.92
Solyc12g087830.1.1	Tomato	nucleus	20.99	36.36
KRH58791	Soybean	nucleus	20.99	36.0
KRH42691	Soybean	nucleus	19.24	35.48
Solyc05g015720.1.1	Tomato	nucleus	11.95	31.3
Solyc12g087810.1.1	Tomato	nucleus	11.66	28.57
PGSC0003DMT400045804	Potato	nucleus	17.78	27.11

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078F2T1	UniProt:A0A078F2T1	EnsemblPlants:CDY08825	ProteinID:CDY08825
ProteinID:CDY08825.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00000787001	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF172	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	TMHMM:TMhelix	UniParc:UPI0004EE4CC2	:	:

Description

BnaA06g23990DBnaA06g23990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F2T1]

Coordinates

chrLK031989:-:744467..749125

Molecular Weight (calculated)

39677.0 Da

IEP (calculated)

9.485

GRAVY (calculated)

-0.082

Length

343 amino acids

Sequence
(BLAST)

001: MGRKKVEIKR IENKSSRQVT FCKRRNGLIE KARQLSVLCE SSVAVLVVSA TGKLYNSSSG DKLNNVVAKI YMFLVFVLFC HFVIMIFIFS INCTNFILIL
101: HVIPEKNLHV LIRAQCCLMV ETCFQMGRTG PRPSRMKHSP QVPNFFETLY IHKPPNLSKE KRINWDIEVL TFPEMLNPLS CLTLYGVSPI FQPKIYTKIF
201: LNRPIVLSKI IDRYKIQQAD DLQTLDLEEI TRNYLPHKKL LELVQSNLEE ANVDGVSVDS LNSLEEQLET ALSVTRTTKT KLMMEFLKTR REKEKLLIEE
301: NLVLASKVTE IWKQTFLVTR DETSMLPEYR FGNNPPETLS LLK

Best Arabidopsis Sequence Match ( AT1G77080.10 )
(BLAST)

001: MHFCFISSIS KIIDRYEIQH ADELRALDLE EKIQNYLPHK ELLETVQSKL EEPNVDNVSV DSLISLEEQL ETALSVSRAR KAELMMEYIE SLKEKEKLLR
101: EENQVLASQM GKNTLLATDD ERGMFPGSSS GNKIPETLPL LN

Arabidopsis Description

MAF1K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT1G77080]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.