CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76906
CDX89487
CDY13746
CDY25607

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10140.1	CDX76906	AT2G22540.1	19011118
AT5G10140.1	CDX89487	AT2G22540.1	19011118
AT5G10140.1	CDY13746	AT2G22540.1	19011118
AT5G10140.1	CDY25607	AT2G22540.1	19011118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69859	Canola	nucleus	83.84	97.46
CDY21642	Canola	nucleus	83.84	97.46
CDX85776	Canola	nucleus	73.36	85.71
AT5G10140.1	Thale cress	nucleus	73.36	85.71
CDY40081	Canola	nucleus	72.05	84.18
CDX78370	Canola	nucleus	71.18	82.74
CDX81163	Canola	nucleus	71.18	82.74
CDX84867	Canola	nucleus	69.0	80.61
CDY14535	Canola	cytosol, nucleus, plastid	26.2	72.29
CDY33995	Canola	nucleus	54.15	64.58
CDY33990	Canola	nucleus	53.28	63.54
CDY24038	Canola	nucleus	58.52	63.51
CDY31290	Canola	nucleus	51.97	61.98
CDY31286	Canola	nucleus	48.91	56.28
CDY08824	Canola	nucleus	48.47	55.22
CDY31289	Canola	nucleus	47.6	54.77
CDY33987	Canola	nucleus, plastid	20.09	41.82
KRH42691	Soybean	nucleus	31.88	39.25
KRH58791	Soybean	nucleus	32.31	37.0
Solyc12g087830.1.1	Tomato	nucleus	31.88	36.87
CDY08825	Canola	nucleus	51.53	34.4
Solyc05g015720.1.1	Tomato	nucleus	17.9	31.3
Solyc12g087810.1.1	Tomato	nucleus	17.47	28.57
PGSC0003DMT400045804	Potato	nucleus	26.64	27.11

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078GAB4	UniProt:A0A078GAB4	EnsemblPlants:CDY21638	ProteinID:CDY21638
ProteinID:CDY21638.1	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00016119001	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF340	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EEC0A6	SEG:seg

Description

BnaC09g46540DBnaC09g46540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAB4]

Coordinates

chrLK032122:-:608371..612906

Molecular Weight (calculated)

25830.3 Da

IEP (calculated)

7.048

GRAVY (calculated)

-0.243

Length

229 amino acids

Sequence
(BLAST)

001: MGRKKLEIKP IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SRKLYSFSSG DNGTVFQICW DFYKVINRIF LLCSAVASMD YLKFLVKILD
101: RYGKQHGDDL KALDRQSKAL DSGSHHELLE LVESKLEESN VDNVSVGSLV QLEEHLENAL SVTRARKTEL MLKLVENLKE KEKLLEEENH VLASQMEKSN
201: LVRAEADNME VSPGQISDIN LLVTLPLLN

Best Arabidopsis Sequence Match ( AT5G10140.1 )
(BLAST)

001: MGRKKLEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYSFSSG DNLVKILDRY GKQHADDLKA LDHQSKALNY GSHYELLELV
101: DSKLVGSNVK NVSIDALVQL EEHLETALSV TRAKKTELML KLVENLKEKE KMLKEENQVL ASQMENNHHV GAEAEMEMSP AGQISDNLPV TLPLLN

Arabidopsis Description

FLCAt5g10140 [Source:UniProtKB/TrEMBL;Acc:Q5Q9J1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.