Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G10140.1 | CDX76906 | AT2G22540.1 | 19011118 |
| AT5G10140.1 | CDX89487 | AT2G22540.1 | 19011118 |
| AT5G10140.1 | CDY13746 | AT2G22540.1 | 19011118 |
| AT5G10140.1 | CDY25607 | AT2G22540.1 | 19011118 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028599.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDY40081 | Canola | nucleus | 95.41 | 95.41 |
| CDX78370 | Canola | nucleus | 87.24 | 86.8 |
| CDX81163 | Canola | nucleus | 87.24 | 86.8 |
| CDX69859 | Canola | nucleus | 86.22 | 85.79 |
| CDY21642 | Canola | nucleus | 86.22 | 85.79 |
| AT5G10140.1 | Thale cress | nucleus | 85.71 | 85.71 |
| CDX84867 | Canola | nucleus | 83.16 | 83.16 |
| CDY14535 | Canola | cytosol, nucleus, plastid | 32.14 | 75.9 |
| CDY21638 | Canola | nucleus | 85.71 | 73.36 |
| CDY24038 | Canola | nucleus | 70.92 | 65.88 |
| CDY33995 | Canola | nucleus | 64.29 | 65.62 |
| CDY33990 | Canola | nucleus | 63.27 | 64.58 |
| CDY31290 | Canola | nucleus | 62.24 | 63.54 |
| CDY31286 | Canola | nucleus | 57.14 | 56.28 |
| CDY31289 | Canola | nucleus | 57.14 | 56.28 |
| CDY08824 | Canola | nucleus | 56.63 | 55.22 |
| CDY33987 | Canola | nucleus, plastid | 21.94 | 39.09 |
| KRH42691 | Soybean | nucleus | 36.22 | 38.17 |
| Solyc12g087830.1.1 | Tomato | nucleus | 38.27 | 37.88 |
| KRH58791 | Soybean | nucleus | 38.27 | 37.5 |
| CDY08825 | Canola | nucleus | 61.22 | 34.99 |
| Solyc05g015720.1.1 | Tomato | nucleus | 19.39 | 29.01 |
| Solyc12g087810.1.1 | Tomato | nucleus | 20.41 | 28.57 |
| PGSC0003DMT400045804 | Potato | nucleus | 32.14 | 28.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ProteinID:AFU61565.1 | ProteinID:ATN24199.1 | unigene:Bna.2244 | EnsemblPlants:CDX85776 |
| ProteinID:CDX85776 | ProteinID:CDX85776.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00143535001 |
| InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 |
| PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF172 |
| GO:Q8W004 | UniProt:Q8W004 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI00000A6B09 | SEG:seg | : | : | : |
Description
BnaA02g00370DBnaA02g00370D protein [Source:UniProtKB/TrEMBL;Acc:Q8W004]
Coordinates
chrLK031842:+:1636658..1640508
Molecular Weight (calculated)
21933.5 Da
IEP (calculated)
9.335
GRAVY (calculated)
-0.469
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKKLEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYNFSAG DNLVKILDRY GKQHADDLKA LDLQSKAPKY GSHHELLELV
101: ESKLVESNSD VSVDSLVQLE DHLETALSVT RARKTELMLK LVDSLKEKEK LLKEENQGLA SQMEKNNLAG AEADKMEMSP GQISDINRPV TLRLLY
101: ESKLVESNSD VSVDSLVQLE DHLETALSVT RARKTELMLK LVDSLKEKEK LLKEENQGLA SQMEKNNLAG AEADKMEMSP GQISDINRPV TLRLLY
001: MGRKKLEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYSFSSG DNLVKILDRY GKQHADDLKA LDHQSKALNY GSHYELLELV
101: DSKLVGSNVK NVSIDALVQL EEHLETALSV TRAKKTELML KLVENLKEKE KMLKEENQVL ASQMENNHHV GAEAEMEMSP AGQISDNLPV TLPLLN
101: DSKLVGSNVK NVSIDALVQL EEHLETALSV TRAKKTELML KLVENLKEKE KMLKEENQVL ASQMENNHHV GAEAEMEMSP AGQISDNLPV TLPLLN
Arabidopsis Description
FLCAt5g10140 [Source:UniProtKB/TrEMBL;Acc:Q5Q9J1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.