CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76906
CDX89487
CDY13746
CDY25607

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10140.1	CDX76906	AT2G22540.1	19011118
AT5G10140.1	CDX89487	AT2G22540.1	19011118
AT5G10140.1	CDY13746	AT2G22540.1	19011118
AT5G10140.1	CDY25607	AT2G22540.1	19011118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69859	Canola	nucleus	97.97	97.97
CDX85776	Canola	nucleus	85.79	86.22
AT5G10140.1	Thale cress	nucleus	85.79	86.22
CDY40081	Canola	nucleus	84.26	84.69
CDY21638	Canola	nucleus	97.46	83.84
CDX78370	Canola	nucleus	82.74	82.74
CDX81163	Canola	nucleus	82.74	82.74
CDX84867	Canola	nucleus	79.7	80.1
CDY14535	Canola	cytosol, nucleus, plastid	30.46	72.29
CDY33995	Canola	nucleus	63.45	65.1
CDY33990	Canola	nucleus	62.44	64.06
CDY24038	Canola	nucleus	67.01	62.56
CDY31290	Canola	nucleus	60.91	62.5
CDY31286	Canola	nucleus	57.36	56.78
CDY31289	Canola	nucleus	55.84	55.28
CDY08824	Canola	nucleus	56.35	55.22
CDY33987	Canola	nucleus, plastid	23.86	42.73
KRH42691	Soybean	nucleus	37.06	39.25
Solyc12g087830.1.1	Tomato	nucleus	37.56	37.37
KRH58791	Soybean	nucleus	37.56	37.0
CDY08825	Canola	nucleus	58.88	33.82
Solyc05g015720.1.1	Tomato	nucleus	20.3	30.53
Solyc12g087810.1.1	Tomato	nucleus	20.3	28.57
PGSC0003DMT400045804	Potato	nucleus	31.47	27.56

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078G9F1	UniProt:A0A078G9F1	EnsemblPlants:CDY21642	ProteinID:CDY21642
ProteinID:CDY21642.1	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00016124001	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF172	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EF406F	SEG:seg

Description

BnaC09g46500DBnaC09g46500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9F1]

Coordinates

chrLK032122:-:629459..634201

Molecular Weight (calculated)

21989.5 Da

IEP (calculated)

6.685

GRAVY (calculated)

-0.358

Length

197 amino acids

Sequence
(BLAST)

001: MGRKKLEIKP IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYSFSSG VNLVKILDRY GKQHGDDLKA LDRQSKALDC GSHHELLELV
101: ESKLEESNVD NVSVGSLVQL EEHLENALSV TRARKTELML KLVENLKEKE KLLEEENHVL ASQMEKSNLV RAEADYMEVS PGQISDINLP VTLPLLN

Best Arabidopsis Sequence Match ( AT5G10140.4 )
(BLAST)

001: MGRKKLEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYSFSSG DNLVKILDRY GKQHADDLKA LDHQSKALNY GSHYELLELV
101: DSKLVGSNVK NVSIDALVQL EEHLETALSV TRAKKTELML KLVENLKEKM ENNHHVGAEA EMEMSPAGQI SDNLPVTLPL LN

Arabidopsis Description

FLCAt5g10140 [Source:UniProtKB/TrEMBL;Acc:Q5Q9J1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.