CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024351.1-P	Field mustard	nucleus	98.51	99.0
CDY14535	Canola	cytosol, nucleus, plastid	31.34	75.9
CDY31286	Canola	nucleus	70.65	71.36
CDY31289	Canola	nucleus	67.66	68.34
CDY31290	Canola	nucleus	63.18	66.15
CDY33995	Canola	nucleus	62.69	65.62
CDY33990	Canola	nucleus	62.69	65.62
CDY33987	Canola	nucleus, plastid	32.34	59.09
CDX69859	Canola	nucleus	56.22	57.36
CDX85776	Canola	nucleus	55.22	56.63
CDY21642	Canola	nucleus	55.22	56.35
CDX84867	Canola	nucleus	54.73	56.12
CDX78370	Canola	nucleus	54.73	55.84
CDX81163	Canola	nucleus	54.23	55.33
CDY40081	Canola	nucleus	53.23	54.59
CDY21638	Canola	nucleus	55.22	48.47
CDY24038	Canola	nucleus	48.76	46.45
Solyc12g087830.1.1	Tomato	nucleus	37.81	38.38
CDY08825	Canola	nucleus	62.69	36.73
KRH42691	Soybean	nucleus	33.33	36.02
KRH58791	Soybean	nucleus	34.83	35.0
Solyc05g015720.1.1	Tomato	nucleus	18.91	29.01
Solyc12g087810.1.1	Tomato	nucleus	19.4	27.86
PGSC0003DMT400045804	Potato	nucleus	30.35	27.11

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078F706	UniProt:A0A078F706	EnsemblPlants:CDY08824	ProteinID:CDY08824
ProteinID:CDY08824.1	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00000786001	InterPro:Hsp_70_fam
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00012	PFAM:PF00319
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF340
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EEA835
SEG:seg	:	:	:	:	:

Description

BnaA06g24000DBnaA06g24000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F706]

Coordinates

chrLK031989:-:737355..741264

Molecular Weight (calculated)

22939.8 Da

IEP (calculated)

9.603

GRAVY (calculated)

-0.517

Length

201 amino acids

Sequence
(BLAST)

001: MGRRKVEIKR IENKSSRQVT FCKRRNGLIE KARQLSVLCG SSVAVLIVSS TGKVYSSSSG DSMAKILKHY EVQHADKLKT LDLTEKTQNY LSLNELLETV
101: QRKIEAANVD NISVQSLIFL EEQFKTDLSL TRARKTELMM QLVKKSLQEK EKLLRDENTV LASQLAEMGK EKEFLETEDE RAMLLEYSSG NNPRETLPLL
201: K

Best Arabidopsis Sequence Match ( AT5G65070.1 )
(BLAST)

001: MGRRKVEIKR IENKSSRQVT FCKRRNGLME KARQLSILCE SSVALIIISA TGRLYSFSSG DSMAKILSRY ELEQADDLKT LDLEEKTLNY LSHKELLETI
101: QCKIEEAKSD NVSIDCLKSL EEQLKTALSV TRARKTELMM ELVKTHQEKE KLLREENQSL TNQLIKMGKM KKSVEAEDAR AMSPESSSDN KPPETLLLLK

Arabidopsis Description

MAF4K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KGH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.