CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031888.1-P	Field mustard	nucleus	91.67	98.88
CDY33995	Canola	nucleus	93.23	93.23
CDY33990	Canola	nucleus	92.71	92.71
CDY14535	Canola	cytosol, nucleus, plastid	34.38	79.52
CDY31286	Canola	nucleus	66.67	64.32
CDY31289	Canola	nucleus	66.15	63.82
CDY08824	Canola	nucleus	66.15	63.18
CDX85776	Canola	nucleus	63.54	62.24
CDX69859	Canola	nucleus	63.02	61.42
CDY40081	Canola	nucleus	62.5	61.22
CDY21642	Canola	nucleus	62.5	60.91
CDX84867	Canola	nucleus	61.46	60.2
CDX78370	Canola	nucleus	61.46	59.9
CDX81163	Canola	nucleus	60.42	58.88
CDY21638	Canola	nucleus	61.98	51.97
CDY33987	Canola	nucleus, plastid	29.17	50.91
CDY24038	Canola	nucleus	52.6	47.87
CDY08825	Canola	nucleus	69.79	39.07
Solyc12g087830.1.1	Tomato	nucleus	39.58	38.38
Solyc05g015720.1.1	Tomato	nucleus	24.48	35.88
KRH42691	Soybean	nucleus	33.85	34.95
KRH58791	Soybean	nucleus	34.9	33.5
Solyc12g087810.1.1	Tomato	nucleus	21.35	29.29
PGSC0003DMT400045804	Potato	nucleus	32.29	27.56

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078GXS5	UniProt:A0A078GXS5	EnsemblPlants:CDY31290	ProteinID:CDY31290
ProteinID:CDY31290.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00047455001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF172	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI0004EE8ACE	SEG:seg	:	:	:

Description

BnaA02g34510DBnaA02g34510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXS5]

Coordinates

chrLK032270:-:58242..62418

Molecular Weight (calculated)

21497.7 Da

IEP (calculated)

6.559

GRAVY (calculated)

-0.496

Length

192 amino acids

Sequence
(BLAST)

001: MGRRKVEIKL IENKSSRQVT FSKRRTGLIE KARQLSVLCE SSVAVLVVSA SGKLYNSSSG DNMTNIVDRY EIQHAGELRS LDLAEKTRNY LPHKELLESV
101: KSNLEEPNVD SVSVDSLISL EDQLETALSA TRARKTELTM EFVKMLQEKE ELLREENLVL VSQIGTTNGR RENNSPVNSS GINPPETLPL LK

Best Arabidopsis Sequence Match ( AT1G77080.4 )
(BLAST)

001: MGRRKIEIKR IENKSSRQVT FSKRRNGLID KARQLSILCE SSVAVVVVSA SGKLYDSSSG DDISKIIDRY EIQHADELRA LDLEEKIQNY LPHKELLETV
101: QSKLEEPNVD NVSVDSLISL EEQLETALSV SRARKAELMM EYIESLKEKE KLLREENQVL ASQMGKNTLL ATDDERGMFP GSSSGNKIPE TLPLLN

Arabidopsis Description

MAF1K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT1G77080]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.