CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76906
CDX89487
CDY13746
CDY25607

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10140.1	CDX76906	AT2G22540.1	19011118
AT5G10140.1	CDX89487	AT2G22540.1	19011118
AT5G10140.1	CDY13746	AT2G22540.1	19011118
AT5G10140.1	CDY25607	AT2G22540.1	19011118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78370	Canola	nucleus	96.45	96.45
CDX85776	Canola	nucleus	86.8	87.24
CDY40081	Canola	nucleus	84.26	84.69
AT5G10140.1	Thale cress	nucleus	83.25	83.67
CDX69859	Canola	nucleus	83.25	83.25
CDY21642	Canola	nucleus	82.74	82.74
CDX84867	Canola	nucleus	80.2	80.61
CDY21638	Canola	nucleus	82.74	71.18
CDY14535	Canola	cytosol, nucleus, plastid	28.93	68.67
CDY24038	Canola	nucleus	68.53	63.98
CDY33995	Canola	nucleus	61.93	63.54
CDY33990	Canola	nucleus	60.91	62.5
CDY31290	Canola	nucleus	58.88	60.42
CDY08824	Canola	nucleus	55.33	54.23
CDY31286	Canola	nucleus	54.31	53.77
CDY31289	Canola	nucleus	53.81	53.27
CDY33987	Canola	nucleus, plastid	21.83	39.09
KRH58791	Soybean	nucleus	38.58	38.0
KRH42691	Soybean	nucleus	35.03	37.1
Solyc12g087830.1.1	Tomato	nucleus	37.06	36.87
CDY08825	Canola	nucleus	56.85	32.65
Solyc05g015720.1.1	Tomato	nucleus	19.29	29.01
Solyc12g087810.1.1	Tomato	nucleus	19.8	27.86
PGSC0003DMT400045804	Potato	nucleus	30.46	26.67

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078D1E5	EnsemblPlants:CDX81163	ProteinID:CDX81163	ProteinID:CDX81163.1
ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00134620001	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350
PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF172	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0004EECB52	SEG:seg	:

Description

BnaC03g04170D

Coordinates

chrLK031823:-:2000958..2004565

Molecular Weight (calculated)

21705.3 Da

IEP (calculated)

9.005

GRAVY (calculated)

-0.284

Length

197 amino acids

Sequence
(BLAST)

001: MGRKKLEIKR IENKSSRQVT FSKRRSGLVE KARQLSVLCD ASIALLVVSS SGKLYSFSAG DNLVRILDRY GKQHADDLNA LDLQSKALSY GSHNELLELV
101: DSKLVESNVV GVSVDTLVQL EGVLENALSL TRARKTELML KLVDSLKEKE KLLKEENQAL ASQKEKKNLA GAEADNMEMS PGQISDINLP VTLPLLN

Best Arabidopsis Sequence Match ( AT5G10140.1 )
(BLAST)

001: MGRKKLEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYSFSSG DNLVKILDRY GKQHADDLKA LDHQSKALNY GSHYELLELV
101: DSKLVGSNVK NVSIDALVQL EEHLETALSV TRAKKTELML KLVENLKEKE KMLKEENQVL ASQMENNHHV GAEAEMEMSP AGQISDNLPV TLPLLN

Arabidopsis Description

FLCAt5g10140 [Source:UniProtKB/TrEMBL;Acc:Q5Q9J1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.