Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21642 | Canola | nucleus | 86.22 | 85.79 |
| CDX69859 | Canola | nucleus | 86.22 | 85.79 |
| Bra028599.1-P | Field mustard | nucleus | 85.71 | 85.71 |
| CDX85776 | Canola | nucleus | 85.71 | 85.71 |
| Bra006051.1-P | Field mustard | nucleus | 84.18 | 83.76 |
| CDX78370 | Canola | nucleus | 83.67 | 83.25 |
| CDX81163 | Canola | nucleus | 83.67 | 83.25 |
| CDY40081 | Canola | nucleus | 83.16 | 83.16 |
| Bra009055.1-P | Field mustard | nucleus | 86.22 | 82.04 |
| Bra022771.1-P | Field mustard | nucleus | 59.69 | 81.82 |
| CDX84867 | Canola | nucleus | 79.59 | 79.59 |
| CDY21638 | Canola | nucleus | 85.71 | 73.36 |
| CDY24038 | Canola | nucleus | 67.86 | 63.03 |
| AT5G65050.3 | Thale cress | nucleus | 61.22 | 61.22 |
| AT5G65060.1 | Thale cress | nucleus | 60.71 | 60.71 |
| AT1G77080.8 | Thale cress | nucleus | 65.82 | 57.85 |
| AT5G65070.3 | Thale cress | nucleus | 59.69 | 50.43 |
| AT5G65080.2 | Thale cress | nucleus | 51.02 | 49.02 |
| KRH42691 | Soybean | nucleus | 35.71 | 37.63 |
| KRH58791 | Soybean | nucleus | 38.27 | 37.5 |
| Solyc12g087830.1.1 | Tomato | nucleus | 36.22 | 35.86 |
| Solyc05g015720.1.1 | Tomato | nucleus | 19.9 | 29.77 |
| PGSC0003DMT400045804 | Potato | nucleus | 29.59 | 25.78 |
| Solyc12g087810.1.1 | Tomato | nucleus | 17.86 | 25.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:830878 | ProteinID:AAD21249.1 | ProteinID:AAV51218.1 | ProteinID:AAV51219.1 |
| ProteinID:AAV51220.1 | ProteinID:AAV51221.1 | ProteinID:AAV51222.1 | ProteinID:AAV51223.1 | ProteinID:AAV51224.1 | ProteinID:AAV51225.1 |
| ProteinID:AAV51226.1 | ProteinID:AAV51227.1 | ProteinID:AAV51228.1 | ProteinID:AAV51229.1 | ProteinID:AAV51230.1 | ProteinID:AED91498.1 |
| ProteinID:AEM06910.1 | ProteinID:AEM06911.1 | ProteinID:AEM06912.1 | ProteinID:AEM06913.1 | ProteinID:AEM06914.1 | ProteinID:AEM06915.1 |
| ProteinID:AEM06916.1 | ProteinID:AEM06917.1 | ProteinID:AEM06918.1 | ProteinID:AEM06919.1 | ProteinID:AEM06920.1 | ProteinID:AEM06921.1 |
| ProteinID:AEM06922.1 | ProteinID:AEM06923.1 | ProteinID:AEM06924.1 | ProteinID:AEM06925.1 | ProteinID:AEM06926.1 | ProteinID:AEM06927.1 |
| ProteinID:AEM06928.1 | ProteinID:AEM06929.1 | ProteinID:AEM06930.1 | ProteinID:AEM06932.1 | ProteinID:AEM06933.1 | ProteinID:AEM06934.1 |
| ProteinID:AEM06935.1 | ProteinID:AEM06936.1 | ProteinID:AEM06937.1 | ProteinID:AEM06938.1 | ProteinID:AEM06939.1 | ProteinID:AEM06940.1 |
| ProteinID:AEM06941.1 | EMBL:AF116527 | EMBL:AF537203 | ProteinID:AFU51407.1 | ProteinID:AFU51408.1 | ProteinID:AFU51409.1 |
| ProteinID:AFU51410.1 | ProteinID:AFU51411.1 | ProteinID:AFU51412.1 | ProteinID:AFU51413.1 | ProteinID:AFU51414.1 | ProteinID:AFU51415.1 |
| ProteinID:AFU51416.1 | ProteinID:AFU51417.1 | ProteinID:AFU51418.1 | ProteinID:AFU51420.1 | ProteinID:AFU51421.1 | ProteinID:AFU51423.1 |
| ProteinID:AFU51424.1 | ProteinID:AKR53096.1 | ProteinID:AKR53097.1 | ArrayExpress:AT5G10140 | EnsemblPlantsGene:AT5G10140 | RefSeq:AT5G10140 |
| TAIR:AT5G10140 | RefSeq:AT5G10140-TAIR-G | EnsemblPlants:AT5G10140.1 | TAIR:AT5G10140.1 | EMBL:AY964092 | EMBL:AY964093 |
| EMBL:AY964094 | EMBL:AY964095 | EMBL:AY964097 | Unigene:At.1629 | EMBL:BT030637 | ProteinID:CAB92055.1 |
| ncoils:Coil | ProteinID:DAA01051.1 | Symbol:FLC | GO:GO:0000003 | GO:GO:0000977 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009266 |
| GO:GO:0009628 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009910 | GO:GO:0009987 | GO:GO:0010048 |
| GO:GO:0030154 | GO:GO:0042752 | GO:GO:0043234 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | RefSeq:NP_196576.1 | PFAM:PF00319 | PFAM:PF01486 |
| PO:PO:0000025 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0007057 | PO:PO:0007611 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009013 | PO:PO:0009031 | PO:PO:0009046 |
| PO:PO:0009066 | PO:PO:0020021 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025374 |
| PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF172 |
| UniProt:Q5Q9J1 | UniProt:Q9S7Q7 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI0000001729 | SEG:seg | : | : | : |
Description
FLCAt5g10140 [Source:UniProtKB/TrEMBL;Acc:Q5Q9J1]
Coordinates
chr5:-:3173382..3179448
Molecular Weight (calculated)
21866.5 Da
IEP (calculated)
8.453
GRAVY (calculated)
-0.393
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKKLEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYSFSSG DNLVKILDRY GKQHADDLKA LDHQSKALNY GSHYELLELV
101: DSKLVGSNVK NVSIDALVQL EEHLETALSV TRAKKTELML KLVENLKEKE KMLKEENQVL ASQMENNHHV GAEAEMEMSP AGQISDNLPV TLPLLN
101: DSKLVGSNVK NVSIDALVQL EEHLETALSV TRAKKTELML KLVENLKEKE KMLKEENQVL ASQMENNHHV GAEAEMEMSP AGQISDNLPV TLPLLN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.