Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31289 | Canola | nucleus | 57.33 | 66.83 |
| AT5G65060.1 | Thale cress | nucleus | 53.45 | 63.27 |
| AT5G65050.3 | Thale cress | nucleus | 53.02 | 62.76 |
| AT5G65080.2 | Thale cress | nucleus | 54.74 | 62.25 |
| AT5G10140.1 | Thale cress | nucleus | 50.43 | 59.69 |
| CDY33987 | Canola | nucleus, plastid | 28.02 | 59.09 |
| AT1G77080.8 | Thale cress | nucleus | 56.03 | 58.3 |
| Bra031886.1-P | Field mustard | nucleus | 47.41 | 44.0 |
| Solyc12g087830.1.1 | Tomato | nucleus | 35.34 | 41.41 |
| KRH42691 | Soybean | nucleus | 29.31 | 36.56 |
| KRH58791 | Soybean | nucleus | 30.6 | 35.5 |
| Solyc05g015720.1.1 | Tomato | nucleus | 17.24 | 30.53 |
| PGSC0003DMT400045804 | Potato | nucleus | 27.59 | 28.44 |
| Solyc12g087810.1.1 | Tomato | nucleus | 16.81 | 27.86 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:836631 | ProteinID:AED97997.1 | ArrayExpress:AT5G65070 | EnsemblPlantsGene:AT5G65070 |
| RefSeq:AT5G65070 | TAIR:AT5G65070 | RefSeq:AT5G65070-TAIR-G | EnsemblPlants:AT5G65070.3 | TAIR:AT5G65070.3 | Unigene:At.16946 |
| ncoils:Coil | UniProt:F4KGH9 | GO:GO:0000003 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005886 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009910 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | Symbol:MAF4 | RefSeq:NP_001190617.1 | PFAM:PF00319 |
| PFAM:PF01486 | PO:PO:0000293 | PO:PO:0020030 | PO:PO:0020100 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF340 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0001E93145 | : | : |
Description
MAF4K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KGH9]
Coordinates
chr5:+:25992243..25996174
Molecular Weight (calculated)
26494.1 Da
IEP (calculated)
7.254
GRAVY (calculated)
-0.481
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRRKVEIKR IENKSSRQVT FCKRRNGLME KARQLSILCE SSVALIIISA TGRLYSFSSG DRGIEDQCTL FTFEINLGPL SIFLLNSNET PVDFMAKILS
101: RYELEQADDL KTLDLEEKTL NYLSHKELLE TIQCKIEEAK SDNVSIDCLK SLEEQLKTAL SVTRARKTEL MMELVKTHQE KEKLLREENQ SLTNQLIKMG
201: KMKKSVEAED ARAMSPESSS DNKPPETLLL LK
101: RYELEQADDL KTLDLEEKTL NYLSHKELLE TIQCKIEEAK SDNVSIDCLK SLEEQLKTAL SVTRARKTEL MMELVKTHQE KEKLLREENQ SLTNQLIKMG
201: KMKKSVEAED ARAMSPESSS DNKPPETLLL LK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.