Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14535 | Canola | cytosol, nucleus, plastid | 29.6 | 79.52 |
| AT5G65060.1 | Thale cress | nucleus | 69.06 | 78.57 |
| AT5G65050.3 | Thale cress | nucleus | 66.82 | 76.02 |
| Bra024350.1-P | Field mustard | nucleus | 63.68 | 72.45 |
| AT5G10140.1 | Thale cress | nucleus | 57.85 | 65.82 |
| AT5G65080.2 | Thale cress | nucleus | 52.02 | 56.86 |
| AT5G65070.3 | Thale cress | nucleus | 58.3 | 56.03 |
| CDY08825 | Canola | nucleus | 60.99 | 39.65 |
| Solyc12g087830.1.1 | Tomato | nucleus | 34.53 | 38.89 |
| KRH58791 | Soybean | nucleus | 32.74 | 36.5 |
| KRH42691 | Soybean | nucleus | 28.7 | 34.41 |
| Solyc05g015720.1.1 | Tomato | nucleus | 20.18 | 34.35 |
| PGSC0003DMT400045804 | Potato | nucleus | 31.39 | 31.11 |
| Solyc12g087810.1.1 | Tomato | nucleus | 17.94 | 28.57 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:844042 | UniProt:A0A1P8ARA3 | ProteinID:ANM59190.1 | ArrayExpress:AT1G77080 |
| EnsemblPlantsGene:AT1G77080 | RefSeq:AT1G77080 | TAIR:AT1G77080 | RefSeq:AT1G77080-TAIR-G | EnsemblPlants:AT1G77080.8 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | Symbol:MAF1 | RefSeq:NP_001321570.1 | PFAM:PF00319 |
| PFAM:PF01486 | PRINTS:PR00404 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF340 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI00001632E0 |
| SEG:seg | : | : | : | : | : |
Description
MAF1K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT1G77080]
Coordinates
chr1:+:28955522..28960111
Molecular Weight (calculated)
25274.3 Da
IEP (calculated)
5.851
GRAVY (calculated)
-0.457
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRRKIEIKR IENKSSRQVT FSKRRNGLID KARQLSILCE SSVAVVVVSA SGKLYDSSSG DDISKIIDRY EIQHADELRA LDLEEKIQNY LPHKELLETV
101: QRLAVRHIFL PSSSDKKNVF FLLSTCEYSK LEEPNVDNVS VDSLISLEEQ LETALSVSRA RKAELMMEYI ESLKEKEKLL REENQVLASQ MGKNTLLATD
201: DERGMFPGSS SGNKIPETLP LLN
101: QRLAVRHIFL PSSSDKKNVF FLLSTCEYSK LEEPNVDNVS VDSLISLEEQ LETALSVSRA RKAELMMEYI ESLKEKEKLL REENQVLASQ MGKNTLLATD
201: DERGMFPGSS SGNKIPETLP LLN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.