Factsheet for Bra024350.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14535	Canola	cytosol, nucleus, plastid	39.29	92.77
AT5G65060.1	Thale cress	nucleus	71.43	71.43
Bra031888.1-P	Field mustard	nucleus	64.29	70.79
AT5G65050.3	Thale cress	nucleus	70.41	70.41
Bra031884.1-P	Field mustard	nucleus	66.33	65.33
AT1G77080.8	Thale cress	nucleus	72.45	63.68
Bra024351.1-P	Field mustard	nucleus	64.8	63.5
Bra028599.1-P	Field mustard	nucleus	61.73	61.73
Bra022771.1-P	Field mustard	nucleus	42.86	58.74
Bra009055.1-P	Field mustard	nucleus	61.22	58.25
Bra006051.1-P	Field mustard	nucleus	57.65	57.36
CDY08825	Canola	nucleus	91.84	52.48
Bra031886.1-P	Field mustard	nucleus	57.65	45.2
Solyc12g087830.1.1	Tomato	nucleus	36.73	36.36
KRH58791	Soybean	nucleus	36.73	36.0
KRH42691	Soybean	nucleus	32.65	34.41
Solyc05g015720.1.1	Tomato	nucleus	20.92	31.3
Solyc12g087810.1.1	Tomato	nucleus	20.41	28.57
PGSC0003DMT400045804	Potato	nucleus	30.61	26.67

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra024350	EnsemblPlants:Bra024350.1	EnsemblPlants:Bra024350.1-P	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4E6E6	InterPro:MADS_MEF2-like
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF172	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI000253F493	:	:	:	:

Description

AT1G77080 (E=1e-072) MAF1, FLM, AGL27 | MAF1 (MADS AFFECTING FLOWERING 1); transcription factor

Coordinates

chrA06:+:15117017..15121593

Molecular Weight (calculated)

22433.2 Da

IEP (calculated)

9.389

GRAVY (calculated)

-0.464

Length

196 amino acids

Sequence
(BLAST)

001: MGRKKVEIKR IENKSSRQVT FCKRRNGLIE KARQLSVLCE SSVAVLVVSA TGKLYNSSSG DNLSKIIDRY KIQQADDLQT LDLEEITRNY LPHKKLLELV
101: QSNLEEANVD GVSVDSLNSL EEQLETALSV TRATKTKLMM EFLKTRREKE KLLIEENLVL ASKIWKQTFL VTRDETSMLP EYRFGNNPPE TLSLLK

Best Arabidopsis Sequence Match ( AT5G65060.1 )
(BLAST)

001: MGRRKVEIKR IENKSSRQVT FSKRRKGLIE KARQLSILCE SSIAVVAVSG SGKLYDSASG DNMSKIIDRY EIHHADELKA LDLAEKIRNY LPHKELLEIV
101: QSKLEESNVD NVSVDSLISM EEQLETALSV IRAKKTELMM EDMKSLQERE KLLIEENQIL ASQVGKKTFL VIEGDRGMSR ENGSGNKVPE TLSLLK

Arabidopsis Description

MAF3Agamous-like MADS-box protein AGL70 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.