Factsheet for Bra028599.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra030228.1-P
Bra038511.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10140.1	Bra030228.1-P	AT2G22540.1	19011118
AT5G10140.1	Bra038511.1-P	AT2G22540.1	19011118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85776	Canola	nucleus	100.0	100.0
CDY40081	Canola	nucleus	95.41	95.41
Bra006051.1-P	Field mustard	nucleus	87.76	87.31
AT5G10140.1	Thale cress	nucleus	85.71	85.71
Bra009055.1-P	Field mustard	nucleus	86.73	82.52
Bra022771.1-P	Field mustard	nucleus	59.69	81.82
Bra031888.1-P	Field mustard	nucleus	56.63	62.36
Bra024350.1-P	Field mustard	nucleus	61.73	61.73
Bra024351.1-P	Field mustard	nucleus	57.14	56.0
Bra031884.1-P	Field mustard	nucleus	56.63	55.78
Bra031886.1-P	Field mustard	nucleus	51.02	40.0
KRH42691	Soybean	nucleus	36.22	38.17
Solyc12g087830.1.1	Tomato	nucleus	38.27	37.88
KRH58791	Soybean	nucleus	38.27	37.5
Solyc05g015720.1.1	Tomato	nucleus	19.39	29.01
Solyc12g087810.1.1	Tomato	nucleus	20.41	28.57
PGSC0003DMT400045804	Potato	nucleus	32.14	28.0

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:AB682785	EMBL:AB682786	ProteinID:ABI30000	ProteinID:ABI30000.1
ProteinID:BAM66580	ProteinID:BAM66580.1	ProteinID:BAM66581	ProteinID:BAM66581.1	EnsemblPlantsGene:Bra028599	EnsemblPlants:Bra028599.1
EnsemblPlants:Bra028599.1-P	ncoils:Coil	EMBL:DQ866875	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF172	UniProt:Q0GFF3
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00000A6B09
SEG:seg	:	:	:	:	:

Description

AT5G10140 (E=9e-063) FLC, FLF, AGL25 | FLC (FLOWERING LOCUS C); specific transcriptional repressor/ transcription factor

Coordinates

chrA02:+:1242917..1246176

Molecular Weight (calculated)

21933.5 Da

IEP (calculated)

9.335

GRAVY (calculated)

-0.469

Length

196 amino acids

Sequence
(BLAST)

001: MGRKKLEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYNFSAG DNLVKILDRY GKQHADDLKA LDLQSKAPKY GSHHELLELV
101: ESKLVESNSD VSVDSLVQLE DHLETALSVT RARKTELMLK LVDSLKEKEK LLKEENQGLA SQMEKNNLAG AEADKMEMSP GQISDINRPV TLRLLY

Best Arabidopsis Sequence Match ( AT5G10140.1 )
(BLAST)

001: MGRKKLEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYSFSSG DNLVKILDRY GKQHADDLKA LDHQSKALNY GSHYELLELV
101: DSKLVGSNVK NVSIDALVQL EEHLETALSV TRAKKTELML KLVENLKEKE KMLKEENQVL ASQMENNHHV GAEAEMEMSP AGQISDNLPV TLPLLN

Arabidopsis Description

FLCAt5g10140 [Source:UniProtKB/TrEMBL;Acc:Q5Q9J1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.