Factsheet for PGSC0003DMT400045804

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 3
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g087830.1.1	Tomato	nucleus	55.56	63.13
CDY14535	Canola	cytosol, nucleus, plastid	16.44	44.58
Solyc12g087810.1.1	Tomato	nucleus	27.56	44.29
Bra031888.1-P	Field mustard	nucleus	26.67	33.71
AT5G65060.1	Thale cress	nucleus	28.89	33.16
AT5G65050.3	Thale cress	nucleus	28.44	32.65
CDY33990	Canola	nucleus	27.56	32.29
CDY31290	Canola	nucleus	27.56	32.29
CDY31286	Canola	nucleus	28.44	32.16
Bra031884.1-P	Field mustard	nucleus	28.44	32.16
Bra028599.1-P	Field mustard	nucleus	28.0	32.14
CDY40081	Canola	nucleus	28.0	32.14
CDX85776	Canola	nucleus	28.0	32.14
CDY33995	Canola	nucleus	27.11	31.77
CDY21642	Canola	nucleus	27.56	31.47
CDX69859	Canola	nucleus	27.56	31.47
AT1G77080.8	Thale cress	nucleus	31.11	31.39
CDX84867	Canola	nucleus	27.11	31.12
Bra024351.1-P	Field mustard	nucleus	27.56	31.0
Bra024350.1-P	Field mustard	nucleus	26.67	30.61
Bra009055.1-P	Field mustard	nucleus	28.0	30.58
CDX81163	Canola	nucleus	26.67	30.46
CDY08824	Canola	nucleus	27.11	30.35
CDX78370	Canola	nucleus	26.22	29.95
Bra006051.1-P	Field mustard	nucleus	26.22	29.95
AT5G10140.1	Thale cress	nucleus	25.78	29.59
KRH42691	Soybean	nucleus	24.0	29.03
Bra022771.1-P	Field mustard	nucleus	18.22	28.67
CDY31289	Canola	nucleus	25.33	28.64
KRH58791	Soybean	nucleus	25.33	28.5
AT5G65080.2	Thale cress	nucleus	25.33	27.94
AT5G65070.3	Thale cress	nucleus	28.44	27.59
CDY24038	Canola	nucleus	25.33	27.01
CDY21638	Canola	nucleus	27.11	26.64
Bra031886.1-P	Field mustard	nucleus	24.0	21.6
CDY08825	Canola	nucleus	27.11	17.78
CDY33987	Canola	nucleus, plastid	7.56	15.45

Protein Annotations

EntrezGene:102593535	MapMan:15.5.14	Gene3D:3.40.1810.10	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR036879
UniProt:M1BI82	InterPro:MADS_MEF2-like	PFAM:PF00319	EnsemblPlantsGene:PGSC0003DMG400017760	PGSC:PGSC0003DMG400017760	EnsemblPlants:PGSC0003DMT400045804
PRINTS:PR00404	PFscan:PS50066	PANTHER:PTHR11945	PANTHER:PTHR11945:SF340	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000295B3BB	:	:	:

Description

MADS-box protein 15 [Source:PGSC_GENE;Acc:PGSC0003DMG400017760]

Coordinates

chr12:+:55554242..55563042

Molecular Weight (calculated)

25942.1 Da

IEP (calculated)

9.114

GRAVY (calculated)

-0.267

Length

225 amino acids

Sequence
(BLAST)

001: MGRRKVEIKR IQDKNCRQVA FCKRRKGLLK KAKEISILCD VDVAVVIISN RGRLHEFSSN NSLSGMLQRY ESHVEAEKEI NAEIQVAEHS KYSGFTTMGE
101: LLQTTERYRS YSSLLFLKAY TTYLLSQFDR QLEETNADGL TVTDLIHLEN ELQTALIQVR SRKVFLLPSV PPPYRNCINQ NSGNLGSATS YTSYFCSVFY
201: KNSHFFFKIM FDFSIIIWLS ISTSE

Best Arabidopsis Sequence Match ( AT5G65070.5 )
(BLAST)

001: MGRRKVEIKR IENKSSRQVT FCKRRNGLME KARQLSILCE SSVALIIISA TGRLYSFSSG DSMAKILSRY ELEQADDLKT LCLNIVERDQ HRITLFFTVG
101: IALESPRRGS KLDLEEKTLN YLSHKELLET IQCKIEEAKS DNVSIDCLKS LEEQLKTALS VTRARKTELM MELVKTHQEK VSISGFYSPS LAMLILESSE
201: TPSLEITRPS

Arabidopsis Description

MAF4K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KGH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.