CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33987	Canola	nucleus, plastid	44.72	80.91
CDY14535	Canola	cytosol, nucleus, plastid	32.16	77.11
CDY31286	Canola	nucleus	74.87	74.87
CDY08824	Canola	nucleus	68.34	67.66
CDY33990	Canola	nucleus	64.32	66.67
CDY33995	Canola	nucleus	63.82	66.15
CDY31290	Canola	nucleus	63.82	66.15
Bra031886.1-P	Field mustard	nucleus	74.87	59.6
AT5G65070.3	Thale cress	nucleus	66.83	57.33
CDX85776	Canola	nucleus	56.28	57.14
CDX84867	Canola	nucleus	55.28	56.12
CDY21642	Canola	nucleus	55.28	55.84
CDX69859	Canola	nucleus	55.28	55.84
CDY40081	Canola	nucleus	54.77	55.61
CDX78370	Canola	nucleus	53.77	54.31
CDX81163	Canola	nucleus	53.27	53.81
CDY21638	Canola	nucleus	54.77	47.6
CDY24038	Canola	nucleus	49.25	46.45
CDY08825	Canola	nucleus	65.83	38.19
Solyc12g087830.1.1	Tomato	nucleus	36.18	36.36
KRH42691	Soybean	nucleus	33.17	35.48
KRH58791	Soybean	nucleus	35.18	35.0
Solyc05g015720.1.1	Tomato	nucleus	20.1	30.53
Solyc12g087810.1.1	Tomato	nucleus	18.09	25.71
PGSC0003DMT400045804	Potato	nucleus	28.64	25.33

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:A0A078H1H3	UniProt:A0A078H1H3	EnsemblPlants:CDY31289	ProteinID:CDY31289
ProteinID:CDY31289.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:GSBRNA2T00047454001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF172	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI000057C51B	SEG:seg	:	:	:

Description

BnaA02g34520DBnaA02g34520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1H3]

Coordinates

chrLK032270:-:52065..56446

Molecular Weight (calculated)

22918.7 Da

IEP (calculated)

8.870

GRAVY (calculated)

-0.684

Length

199 amino acids

Sequence
(BLAST)

001: MGRRKVEIKR IESKSSRQVT FCKRRNGLIE KARQLSVLCE SSVAILMVSS TGKLYTSSYG DSMEKIIKRY EIQHADELKN LDLEEKFRKY LSYKELVDIV
101: QCKCEEAKVD DASVESLNSL EEQFKAALSV TRARKTQLMM EFLKNLEEKE KLLREENQIL ASQLTKMEKK RLPETEGEGA MSSENSSRNS PPETLPLLK

Best Arabidopsis Sequence Match ( AT5G65070.1 )
(BLAST)

001: MGRRKVEIKR IENKSSRQVT FCKRRNGLME KARQLSILCE SSVALIIISA TGRLYSFSSG DSMAKILSRY ELEQADDLKT LDLEEKTLNY LSHKELLETI
101: QCKIEEAKSD NVSIDCLKSL EEQLKTALSV TRARKTELMM ELVKTHQEKE KLLREENQSL TNQLIKMGKM KKSVEAEDAR AMSPESSSDN KPPETLLLLK

Arabidopsis Description

MAF4K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:F4KGH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.