Factsheet for Bra031886.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 29559991

gfp PMID: 29559991 doi

F Huang, T Liu, X Hou

State Key Laboratory of Crop Genetics and Germplasm Enhancement, Key Laboratory of Biology and Germplasm Enhancement of Horticultural Crops in East China, Ministry of Agriculture, College of Horticulture, Nanjing Agricultural University, Nanjing, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31289	Canola	nucleus	59.6	74.87
Bra031884.1-P	Field mustard	nucleus	48.0	60.3
CDY33987	Canola	nucleus, plastid	26.4	60.0
Bra024351.1-P	Field mustard	nucleus	46.4	58.0
Bra024350.1-P	Field mustard	nucleus	45.2	57.65
Bra022771.1-P	Field mustard	nucleus	30.4	53.15
Bra031888.1-P	Field mustard	nucleus	37.6	52.81
Bra028599.1-P	Field mustard	nucleus	40.0	51.02
Bra009055.1-P	Field mustard	nucleus	41.2	50.0
Bra006051.1-P	Field mustard	nucleus	38.8	49.24
AT5G65070.3	Thale cress	nucleus	44.0	47.41
KRH42691	Soybean	nucleus	26.4	35.48
Solyc12g087830.1.1	Tomato	nucleus	27.6	34.85
KRH58791	Soybean	nucleus	27.6	34.5
Solyc05g015720.1.1	Tomato	nucleus	14.0	26.72
PGSC0003DMT400045804	Potato	nucleus	21.6	24.0
Solyc12g087810.1.1	Tomato	nucleus	13.2	23.57

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra031886	EnsemblPlants:Bra031886.1	EnsemblPlants:Bra031886.1-P	ncoils:Coil
GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005886	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908	GO:GO:0009910	GO:GO:0009987
GO:GO:0016020	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879
UniProt:M4ESV6	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350
PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF340	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00025468F6	SEG:seg	:

Description

AT5G65060 (E=3e-036) MAF3, FCL3 | MAF3 (MADS AFFECTING FLOWERING 3); transcription factor

Coordinates

chrA02:+:27273919..27281363

Molecular Weight (calculated)

28146.1 Da

IEP (calculated)

9.258

GRAVY (calculated)

-0.252

Length

250 amino acids

Sequence
(BLAST)

001: MGRRKVEIKR IESKSSRQVT FCKRRNGLIE KARQLSVLCE SSVAILMVSS TGKLYTSSYG DSMEKIIKRY EIQHADELKN LFLFSVNIYA CSKCEEAKVD
101: DASVESLNSL EEQFKAALSV TRARKTQLMM EFLKNLEEKE KLLREENQIL ASQLTKSRIS DVSYEERDDP DGGLKHKGLS AYVAGHGLWD MNHVMFVNVN
201: ATTRAANCFS VRVAKCFVSI KTRSASFVVL APDFARIKPP VTPQCALALC

Best Arabidopsis Sequence Match ( AT5G65050.2 )
(BLAST)

001: MGRKKVEIKR IENKSSRQVT FSKRRNGLIE KARQLSILCE SSIAVLVVSG SGKLYKSASG DNMSKIIDRY EIHHADELEA LDLAEKTRNY LPLKELLEIV
101: QSKLEESNVD NASVDTLISL EEQLETALSV TRARKTELMM GEVKSLQKTE NLLREENQTL ASQVTKTSLE ANSSVDTQ

Arabidopsis Description

AGL31Agamous-like MADS-box protein AGL31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPN7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.