Factsheet for Bra009055.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra030228.1-P
Bra038511.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10140.1	Bra030228.1-P	AT2G22540.1	19011118
AT5G10140.1	Bra038511.1-P	AT2G22540.1	19011118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69859	Canola	nucleus	94.66	98.98
Bra028599.1-P	Field mustard	nucleus	82.52	86.73
AT5G10140.1	Thale cress	nucleus	82.04	86.22
Bra006051.1-P	Field mustard	nucleus	80.1	83.76
Bra022771.1-P	Field mustard	nucleus	56.8	81.82
Bra031888.1-P	Field mustard	nucleus	52.91	61.24
Bra024350.1-P	Field mustard	nucleus	58.25	61.22
Bra024351.1-P	Field mustard	nucleus	55.83	57.5
Bra031884.1-P	Field mustard	nucleus	54.85	56.78
Bra031886.1-P	Field mustard	nucleus	50.0	41.2
KRH42691	Soybean	nucleus	35.92	39.78
KRH58791	Soybean	nucleus	37.38	38.5
Solyc12g087830.1.1	Tomato	nucleus	36.41	37.88
Solyc05g015720.1.1	Tomato	nucleus	19.9	31.3
Solyc12g087810.1.1	Tomato	nucleus	19.42	28.57
PGSC0003DMT400045804	Potato	nucleus	30.58	28.0

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EMBL:AB682783	EMBL:AB682784	ProteinID:ABI29999	ProteinID:ABI29999.1
ProteinID:BAM66578	ProteinID:BAM66578.1	ProteinID:BAM66579	ProteinID:BAM66579.1	EnsemblPlantsGene:Bra009055	EnsemblPlants:Bra009055.1
EnsemblPlants:Bra009055.1-P	ncoils:Coil	EMBL:DQ866874	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	UniProt:M4CXV8	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF172
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002544894
SEG:seg	:	:	:	:	:

Description

AT5G10140 (E=4e-063) FLC, FLF, AGL25 | FLC (FLOWERING LOCUS C); specific transcriptional repressor/ transcription factor

Coordinates

chrA10:+:15051380..15055720

Molecular Weight (calculated)

22945.7 Da

IEP (calculated)

6.371

GRAVY (calculated)

-0.353

Length

206 amino acids

Sequence
(BLAST)

001: MGRKKLEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYSFSSG DNLVKILDRY GKQHDDDLKA LDRQSKALDC GSHHELLELV
101: ESKLEESNVD NVSVGSLVQL EEHLENALSV TRARKTELML KLVENLKEKE KLLEEENHVL ASQMEKSNLV RAEADNMDVS PGQISDINLP VTLPLLKGGL
201: VGVEFL

Best Arabidopsis Sequence Match ( AT5G10140.1 )
(BLAST)

001: MGRKKLEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYSFSSG DNLVKILDRY GKQHADDLKA LDHQSKALNY GSHYELLELV
101: DSKLVGSNVK NVSIDALVQL EEHLETALSV TRAKKTELML KLVENLKEKE KMLKEENQVL ASQMENNHHV GAEAEMEMSP AGQISDNLPV TLPLLN

Arabidopsis Description

FLCAt5g10140 [Source:UniProtKB/TrEMBL;Acc:Q5Q9J1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.