Factsheet for Bra030228.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000392.1-P
Bra000393.1-P
Bra004007.1-P
Bra004361.1-P
Bra004927.1-P
Bra004928.1-P
Bra006051.1-P
Bra009055.1-P
Bra010623.1-P
Bra011021.1-P
Bra011797.1-P
Bra022771.1-P
Bra028599.1-P
Bra029424.1-P
Bra038326.1-P
Bra039324.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22540.1	Bra011021.1-P	AT1G26310.1	11439126
AT2G22540.1	Bra004007.1-P	AT1G69120.1	11439126
AT2G22540.1	Bra004361.1-P	AT1G69120.1	11439126
AT2G22540.1	Bra038326.1-P	AT1G69120.1	11439126
AT2G22540.1	Bra004007.1-P	AT1G69120.1	15805477
AT2G22540.1	Bra004361.1-P	AT1G69120.1	15805477
AT2G22540.1	Bra038326.1-P	AT1G69120.1	15805477
AT2G22540.1	Bra000392.1-P	AT2G45650.1	15805477
AT2G22540.1	Bra004927.1-P	AT2G45650.1	15805477
AT2G22540.1	Bra000393.1-P	AT2G45660.1	15805477
AT2G22540.1	Bra004928.1-P	AT2G45660.1	15805477
AT2G22540.1	Bra039324.1-P	AT2G45660.1	15805477
AT2G22540.1	Bra029424.1-P	AT4G11880.1	15805477
AT2G22540.1	Bra010623.1-P	AT4G37940.1	15805477
AT2G22540.1	Bra011797.1-P	AT4G37940.1	15805477
AT2G22540.1	Bra006051.1-P	AT5G10140.1	19011118
AT2G22540.1	Bra009055.1-P	AT5G10140.1	19011118
AT2G22540.1	Bra022771.1-P	AT5G10140.1	19011118
AT2G22540.1	Bra028599.1-P	AT5G10140.1	19011118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25607	Canola	nucleus	74.15	100.0
Bra038511.1-P	Field mustard	nucleus	92.37	90.46
AT2G22540.1	Thale cress	nucleus	90.68	89.17
Zm00001d044899_P001	Maize	nucleus	20.34	67.61
GSMUA_Achr10P...	Banana	nucleus	58.47	60.53
GSMUA_Achr3P06800_001	Banana	nucleus	55.51	57.21
Os06t0217300-01	Rice	nucleus	53.81	56.95
Bra019221.1-P	Field mustard	nucleus	52.12	56.94
Zm00001d018142_P001	Maize	nucleus	52.54	56.11
Os02t0761000-01	Rice	nucleus	53.39	55.26
Zm00001d052180_P001	Maize	nucleus	51.27	54.75
KXG31156	Sorghum	nucleus	51.69	53.51
TraesCS6A01G313800.1	Wheat	nucleus	51.27	53.07
TraesCS6B01G343900.1	Wheat	cytosol	51.27	53.07
TraesCS6D01G293200.1	Wheat	nucleus	50.85	52.63
HORVU6Hr1G077300.8	Barley	nucleus	50.85	52.17
TraesCS7D01G176700.1	Wheat	nucleus	48.31	50.44
EER88077	Sorghum	nucleus	47.46	49.78
TraesCS4D01G301100.1	Wheat	nucleus	47.46	49.56
TraesCS4B01G302600.2	Wheat	nucleus	47.46	49.12
KXG40019	Sorghum	nucleus	47.88	48.71
HORVU4Hr1G077850.13	Barley	nucleus	47.46	47.86
TraesCS7A01G175200.2	Wheat	nucleus	48.31	47.5
Os03t0186600-01	Rice	nucleus	48.73	46.37
TraesCS7B01G080300.2	Wheat	cytosol	47.03	46.06
GSMUA_Achr9P15180_001	Banana	nucleus	57.2	45.92
TraesCS4A01G002600.1	Wheat	nucleus	31.36	45.4
Zm00001d027957_P001	Maize	nucleus	48.31	45.06
Zm00001d027955_P001	Maize	extracellular, golgi	27.12	35.56
HORVU7Hr1G036130.10	Barley	nucleus, plastid	29.24	28.75

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EnsemblPlantsGene:Bra030228	EnsemblPlants:Bra030228.1	EnsemblPlants:Bra030228.1-P	ncoils:Coil
GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M4EN58
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF179	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000254420C	SEG:seg	:	:

Description

AT2G22540 (E=6e-107) SVP, AGL22 | SVP (SHORT VEGETATIVE PHASE); transcription factor/ translation repressor, nucleic acid binding

Coordinates

chrA04:+:9827203..9829767

Molecular Weight (calculated)

26778.7 Da

IEP (calculated)

5.816

GRAVY (calculated)

-0.809

Length

236 amino acids

Sequence
(BLAST)

001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS TGKLFEFCSS SMREVLERHN LQSKNLEKLD QPSLELQLVE NSDNSRLSKE
101: IADKSHQLRQ MRGEELQGLN IEELQQLEKA LEAGLTRVIE TKSEKIMSEI SDLQRKGMKL MDENKRLRQH GTQLTEENER LGKQIYNNMH ERYGGVESEK
201: TAVYEEGQSS ESITNAGNST GAPVDSESSD TSLRLG

Best Arabidopsis Sequence Match ( AT2G22540.3 )
(BLAST)

001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFEFCSS SMKEVLERHN LQSKNLEKLD QPSLELQLVE NSDHARMSKE
101: IADKSHRLRQ MRGEELQGLD IEELQQLEKA LETGLTRVIE TKSDKIMSEI SELQKKGMQL MDENKRLRQQ GTQLTEENER LGMQICNNVH AHGGAESENA
201: AVYEEGQSSE SITNAGNSTG APVDSESSDT SLRLGLPYGG

Arabidopsis Description

SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.