Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d027957_P001 | Maize | nucleus | 80.56 | 57.31 |
| TraesCS4A01G002600.1 | Wheat | nucleus | 50.0 | 55.21 |
| TraesCS4B01G302600.2 | Wheat | nucleus | 53.89 | 42.54 |
| TraesCS4D01G301100.1 | Wheat | nucleus | 52.78 | 42.04 |
| HORVU4Hr1G077850.13 | Barley | nucleus | 52.22 | 40.17 |
| CDY25607 | Canola | nucleus | 32.78 | 33.71 |
| Zm00001d052180_P001 | Maize | nucleus | 38.89 | 31.67 |
| Zm00001d018142_P001 | Maize | nucleus | 38.89 | 31.67 |
| VIT_03s0167g00070.t01 | Wine grape | nucleus | 30.56 | 30.05 |
| GSMUA_Achr10P... | Banana | nucleus | 37.22 | 29.39 |
| Solyc04g076280.2.1 | Tomato | vacuole | 31.67 | 29.23 |
| VIT_00s0313g00070.t01 | Wine grape | nucleus | 35.56 | 28.19 |
| CDY13746 | Canola | nucleus | 36.67 | 27.97 |
| GSMUA_Achr3P06800_001 | Banana | nucleus | 35.56 | 27.95 |
| CDX76906 | Canola | nucleus | 36.11 | 27.54 |
| Bra038511.1-P | Field mustard | nucleus | 36.67 | 27.39 |
| Bra030228.1-P | Field mustard | nucleus | 35.56 | 27.12 |
| AT2G22540.1 | Thale cress | nucleus | 36.11 | 27.08 |
| CDX89487 | Canola | nucleus | 35.0 | 26.69 |
| KRH69674 | Soybean | nucleus | 33.33 | 26.43 |
| KRH74496 | Soybean | nucleus | 32.78 | 25.99 |
| KRH42097 | Soybean | nucleus | 29.44 | 25.85 |
| PGSC0003DMT400024247 | Potato | nucleus | 33.33 | 25.53 |
| PGSC0003DMT400041773 | Potato | nucleus | 33.33 | 25.21 |
| KRH49819 | Soybean | nucleus | 27.22 | 23.79 |
| VIT_03s0017g00440.t01 | Wine grape | nucleus | 12.22 | 23.4 |
| PGSC0003DMT400083739 | Potato | nucleus | 28.33 | 23.08 |
| Bra019221.1-P | Field mustard | nucleus | 27.22 | 22.69 |
| CDY11019 | Canola | nucleus | 27.22 | 22.69 |
| CDY03445 | Canola | nucleus | 27.78 | 22.62 |
| Solyc11g010570.1.1 | Tomato | nucleus | 32.78 | 22.26 |
| KRH10603 | Soybean | nucleus | 25.56 | 22.12 |
| KRH21764 | Soybean | nucleus | 25.0 | 21.84 |
| AT4G24540.1 | Thale cress | nucleus | 26.67 | 21.82 |
| VIT_15s0107g00120.t01 | Wine grape | nucleus | 21.67 | 21.67 |
| GSMUA_Achr9P15180_001 | Banana | nucleus | 35.0 | 21.43 |
| KRH52935 | Soybean | nucleus | 27.78 | 21.37 |
| CDX92641 | Canola | nucleus | 25.56 | 20.09 |
| VIT_18s0001g07460.t01 | Wine grape | nucleus | 32.22 | 18.12 |
| Solyc01g105800.2.1 | Tomato | nucleus | 27.22 | 17.56 |
| KRH10606 | Soybean | nucleus | 20.0 | 17.06 |
| KRH21757 | Soybean | nucleus | 21.11 | 15.32 |
| Zm00001d044899_P001 | Maize | nucleus | 3.89 | 9.86 |
| VIT_03s0017g00450.t01 | Wine grape | nucleus | 3.89 | 9.33 |
| VIT_03s0167g00100.t01 | Wine grape | nucleus | 2.78 | 8.2 |
| VIT_00s0729g00010.t01 | Wine grape | nucleus | 2.78 | 8.06 |
| VIT_03s0017g00360.t01 | Wine grape | nucleus | 2.78 | 7.94 |
| VIT_15s0024g01860.t01 | Wine grape | nucleus | 2.78 | 7.69 |
| KRH62216 | Soybean | nucleus | 2.78 | 7.58 |
| VIT_15s0024g02000.t01 | Wine grape | nucleus | 2.78 | 5.81 |
Protein Annotations
| MapMan:35.1 | UniProt:A0A1D6JQZ6 | GO:GO:0003674 | GO:GO:0003700 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR002487 | ProteinID:ONL94379.1 | PFAM:PF01486 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF179 | SignalP:SignalP-noTM | InterPro:TF_Kbox | TMHMM:TMhelix | UniParc:UPI0008445ECD |
| EnsemblPlantsGene:Zm00001d027955 | EnsemblPlants:Zm00001d027955_P001 | EnsemblPlants:Zm00001d027955_T001 | SEG:seg | : | : |
Description
MADS-box transcription factor 47
Coordinates
chr1:-:18280824..18282397
Molecular Weight (calculated)
19980.9 Da
IEP (calculated)
4.628
GRAVY (calculated)
-0.252
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLSRRCGAT NATLWLLLFG VAVGVFCDCP LVTDNVVCYL MRGEELQRLS VEQLQELEKT LESGLGSVLK TKSQKILDEI SGLERKASIT PFPNCSTSVL
101: TCVVKQRTQL IEENSRLKEQ LQVTRMSRME TQLGADPEFV YEEGQSSESV TNTSYPRPST DTDDCSDTSL RLGLPLFSSK
101: TCVVKQRTQL IEENSRLKEQ LQVTRMSRME TQLGADPEFV YEEGQSSESV TNTSYPRPST DTDDCSDTSL RLGLPLFSSK
001: MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALIIFSS TGKLFDMKEV LERHNLQSKN LEKLDQPSLE LQLVENSDHA RMSKEIADKS
101: HRLRQMRGEE LQGLDIEELQ QLEKALETGL TRVIETKSDK IMSEISELQK KGMQLMDENK RLRQQGTQLT EENERLGMQI CNNVHAHGGA ESENAAVYEE
201: GQSSESITNA GNSTGAPVDS ESSDTSLRLG LPYGG
101: HRLRQMRGEE LQGLDIEELQ QLEKALETGL TRVIETKSDK IMSEISELQK KGMQLMDENK RLRQQGTQLT EENERLGMQI CNNVHAHGGA ESENAAVYEE
201: GQSSESITNA GNSTGAPVDS ESSDTSLRLG LPYGG
Arabidopsis Description
SVPAt2g22540 [Source:UniProtKB/TrEMBL;Acc:A7XFU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.