Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER95753 | Sorghum | nucleus | 95.57 | 95.93 |
| KRH75125 | Soybean | nucleus | 20.66 | 91.8 |
| TraesCS2D01G262700.1 | Wheat | nucleus | 86.35 | 86.35 |
| Os07t0108900-02 | Rice | nucleus | 83.76 | 85.02 |
| TraesCS2B01G281000.1 | Wheat | nucleus | 85.61 | 84.67 |
| TraesCS2A01G261200.2 | Wheat | nucleus | 85.61 | 84.67 |
| Zm00001d007949_P001 | Maize | nucleus | 93.73 | 83.28 |
| HORVU2Hr1G063800.7 | Barley | nucleus, plastid | 83.39 | 73.86 |
| Zm00001d013259_P002 | Maize | nucleus | 65.68 | 63.8 |
| Bra004361.1-P | Field mustard | nucleus | 43.54 | 62.43 |
| CDY19977 | Canola | nucleus | 23.25 | 61.76 |
| VIT_01s0011g00100.t01 | Wine grape | nucleus | 54.24 | 61.0 |
| KRH07467 | Soybean | nucleus | 52.03 | 59.75 |
| Solyc06g069430.2.1 | Tomato | nucleus | 53.51 | 59.18 |
| KRH45412 | Soybean | nucleus | 51.29 | 58.9 |
| KRH70974 | Soybean | nucleus | 52.4 | 58.44 |
| Zm00001d034045_P003 | Maize | nucleus | 62.73 | 58.42 |
| PGSC0003DMT400072888 | Potato | nucleus | 52.4 | 58.2 |
| Solyc05g056620.1.1 | Tomato | nucleus | 52.4 | 58.2 |
| PGSC0003DMT400010451 | Potato | nucleus | 53.51 | 58.0 |
| Solyc03g114830.2.1 | Tomato | nucleus | 52.77 | 57.89 |
| VIT_17s0000g04990.t01 | Wine grape | nucleus | 51.66 | 57.61 |
| Bra025411.1-P | Field mustard | nucleus | 36.9 | 56.82 |
| VIT_14s0083g01030.t01 | Wine grape | nucleus | 51.66 | 56.68 |
| PGSC0003DMT400063313 | Potato | nucleus | 51.66 | 56.45 |
| CDY34564 | Canola | nucleus | 45.39 | 56.42 |
| CDY36077 | Canola | nucleus | 45.76 | 56.11 |
| AT1G69120.1 | Thale cress | nucleus | 51.29 | 54.3 |
| CDX95960 | Canola | nucleus | 50.92 | 53.91 |
| KRH63171 | Soybean | nucleus | 48.34 | 53.69 |
| KRH03173 | Soybean | nucleus | 47.23 | 53.56 |
| CDY58690 | Canola | nucleus | 47.6 | 53.53 |
| CDY33554 | Canola | nucleus | 50.55 | 53.52 |
| Bra038326.1-P | Field mustard | nucleus | 50.18 | 53.12 |
| CDY65811 | Canola | nucleus | 50.18 | 53.12 |
| AT5G60910.1 | Thale cress | nucleus | 47.23 | 52.89 |
| KRH54740 | Soybean | nucleus | 47.6 | 52.87 |
| PGSC0003DMT400003485 | Potato | nucleus | 47.97 | 52.63 |
| Bra029347.1-P | Field mustard | nucleus | 46.49 | 52.5 |
| CDY42841 | Canola | nucleus | 46.49 | 52.5 |
| KRH56774 | Soybean | nucleus | 47.23 | 52.46 |
| Bra012997.1-P | Field mustard | nucleus | 46.49 | 52.28 |
| CDY02185 | Canola | nucleus | 46.49 | 52.28 |
| Solyc02g089210.2.1 | Tomato | nucleus | 47.97 | 52.0 |
| Zm00001d022088_P004 | Maize | nucleus | 49.45 | 51.94 |
| PGSC0003DMT400068325 | Potato | nucleus | 44.65 | 51.71 |
| CDY47002 | Canola | nucleus | 45.76 | 51.45 |
| Bra035952.1-P | Field mustard | nucleus | 45.76 | 51.45 |
| CDY16832 | Canola | nucleus | 45.76 | 51.45 |
| Bra011021.1-P | Field mustard | nucleus | 47.6 | 50.79 |
| AT1G26310.1 | Thale cress | nucleus | 47.6 | 50.59 |
| Solyc02g065730.1.1 | Tomato | nucleus | 42.8 | 49.57 |
| CDY04265 | Canola | nucleus | 50.55 | 49.46 |
| Bra004007.1-P | Field mustard | nucleus | 49.45 | 49.45 |
| Zm00001d003409_P001 | Maize | nucleus | 15.87 | 49.43 |
| KRH45099 | Soybean | nucleus | 44.28 | 48.39 |
| CDY07357 | Canola | nucleus | 50.55 | 47.4 |
| KRG93701 | Soybean | nucleus | 41.7 | 46.31 |
| Bra036201.1-P | Field mustard | nucleus | 42.07 | 45.97 |
| CDY00082 | Canola | nucleus | 41.7 | 45.56 |
| KRH18331 | Soybean | nucleus | 40.96 | 45.49 |
| KRH01382 | Soybean | nucleus | 42.44 | 45.45 |
| CDX86353 | Canola | nucleus | 41.7 | 45.38 |
| AT3G30260.1 | Thale cress | nucleus | 41.7 | 45.38 |
| CDY45899 | Canola | nucleus | 41.33 | 44.98 |
| Zm00001d021057_P001 | Maize | nucleus | 40.96 | 44.94 |
| Zm00001d045231_P002 | Maize | nucleus | 37.27 | 44.89 |
| Zm00001d031620_P001 | Maize | nucleus | 42.07 | 44.71 |
| Zm00001d006094_P001 | Maize | nucleus | 40.59 | 43.82 |
| Zm00001d034047_P007 | Maize | nucleus | 38.38 | 43.33 |
| Zm00001d045227_P001 | Maize | nucleus | 20.66 | 41.48 |
| Zm00001d048082_P001 | Maize | nucleus | 37.27 | 40.08 |
| Zm00001d051465_P002 | Maize | nucleus | 41.33 | 38.23 |
| Zm00001d028217_P001 | Maize | nucleus | 36.16 | 37.98 |
| Zm00001d023736_P001 | Maize | nucleus | 35.06 | 36.97 |
| CDX85287 | Canola | nucleus | 23.99 | 34.76 |
| Zm00001d017932_P002 | Maize | nucleus | 30.26 | 34.75 |
| Zm00001d016957_P003 | Maize | nucleus | 29.52 | 33.33 |
| Zm00001d042591_P002 | Maize | nucleus | 32.84 | 33.21 |
| Zm00001d023955_P003 | Maize | nucleus | 32.1 | 32.83 |
| Zm00001d017614_P003 | Maize | nucleus | 32.84 | 32.13 |
| CDY35780 | Canola | nucleus | 23.25 | 31.98 |
| Zm00001d041781_P001 | Maize | nucleus | 32.84 | 31.01 |
| Zm00001d039434_P001 | Maize | nucleus | 29.52 | 30.53 |
| Zm00001d050897_P002 | Maize | nucleus | 31.0 | 26.58 |
| Zm00001d037737_P001 | Maize | nucleus | 29.15 | 25.82 |
| Zm00001d008882_P001 | Maize | nucleus | 28.04 | 23.1 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:541765 | UniProt:A0A1D6HRH9 | ncoils:Coil | GO:GO:0000977 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | ProteinID:ONM51100.1 |
| PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 |
| PANTHER:PTHR11945 | PANTHER:PTHR11945:SF275 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox |
| InterPro:TF_MADSbox_sf | UniParc:UPI0001B3714E | EnsemblPlantsGene:Zm00001d018667 | EnsemblPlants:Zm00001d018667_P003 | EnsemblPlants:Zm00001d018667_T003 | SEG:seg |
Description
MADS3 MADS3
Coordinates
chr7:+:2191954..2203098
Molecular Weight (calculated)
31096.2 Da
IEP (calculated)
9.537
GRAVY (calculated)
-0.863
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVQLKR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVAVIVFSP KGKLYEYASD SRMDKILERY ERYSYAEKAL ISAESESEGN WCHEYRKLKA
101: KIETIQRCHK HLMGEDLESL NPKELQQLEQ QLESSLKHIR SRKSHLMAES ISELQKKERS LQEENKALQK ELSERQKAVA SRQQQQQQVQ WDQQTQVQVQ
201: TSSSSSSFMM RQDQQGLPPP QNICFPPLSI GERGEEVAAA AQQQLPPPPG QAQPQLRIAG LPPWMLSHLN A
101: KIETIQRCHK HLMGEDLESL NPKELQQLEQ QLESSLKHIR SRKSHLMAES ISELQKKERS LQEENKALQK ELSERQKAVA SRQQQQQQVQ WDQQTQVQVQ
201: TSSSSSSFMM RQDQQGLPPP QNICFPPLSI GERGEEVAAA AQQQLPPPPG QAQPQLRIAG LPPWMLSHLN A
001: MGRGRVELKR IENKINRQVT FSKRRTGLLK KAQEISVLCD AEVSLIVFSH KGKLFEYSSE SCMEKVLERY ERYSYAERQL IAPDSHVNAQ TNWSMEYSRL
101: KAKIELLERN QRHYLGEELE PMSLKDLQNL EQQLETALKH IRSRKNQLMN ESLNHLQRKE KEIQEENSML TKQIKERENI LRTKQTQCEQ LNRSVDDVPQ
201: PQPFQHPHLY MIAHQTSPFL NMGGLYQEED QTAMRRNNLD LTLEPIYNYL GCYAA
101: KAKIELLERN QRHYLGEELE PMSLKDLQNL EQQLETALKH IRSRKNQLMN ESLNHLQRKE KEIQEENSML TKQIKERENI LRTKQTQCEQ LNRSVDDVPQ
201: PQPFQHPHLY MIAHQTSPFL NMGGLYQEED QTAMRRNNLD LTLEPIYNYL GCYAA
Arabidopsis Description
CALTranscription factor CAULIFLOWER [Source:UniProtKB/Swiss-Prot;Acc:Q39081]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.