Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36077 | Canola | nucleus | 97.25 | 95.93 |
| Bra011021.1-P | Field mustard | nucleus | 97.25 | 83.46 |
| AT1G26310.1 | Thale cress | nucleus | 84.4 | 72.16 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 20.18 | 65.67 |
| CDY65811 | Canola | nucleus | 76.15 | 64.84 |
| CDX95960 | Canola | nucleus | 75.69 | 64.45 |
| CDY33554 | Canola | nucleus | 75.23 | 64.06 |
| VIT_01s0011g00100.t01 | Wine grape | nucleus | 66.51 | 60.17 |
| CDY19977 | Canola | nucleus | 27.98 | 59.8 |
| CDY04265 | Canola | nucleus | 75.23 | 59.21 |
| CDY07357 | Canola | nucleus | 75.23 | 56.75 |
| PGSC0003DMT400072888 | Potato | nucleus | 61.47 | 54.92 |
| Solyc05g056620.1.1 | Tomato | nucleus | 61.47 | 54.92 |
| CDY72391 | Canola | nucleus | 17.89 | 52.0 |
| TraesCS5A01G391700.1 | Wheat | nucleus | 57.8 | 51.64 |
| EER90862 | Sorghum | nucleus | 56.88 | 50.61 |
| GSMUA_Achr2P13650_001 | Banana | nucleus | 56.42 | 50.0 |
| GSMUA_Achr6P00050_001 | Banana | nucleus | 55.5 | 50.0 |
| TraesCS5B01G396600.2 | Wheat | nucleus | 56.88 | 49.4 |
| TraesCS5D01G401500.1 | Wheat | cytosol, nucleus | 56.88 | 48.82 |
| Os03t0752800-02 | Rice | nucleus | 55.05 | 48.78 |
| GSMUA_Achr4P23540_001 | Banana | nucleus | 55.05 | 48.39 |
| CDY42841 | Canola | nucleus | 53.21 | 48.33 |
| GSMUA_Achr7P00460_001 | Banana | nucleus | 55.05 | 48.0 |
| CDY47002 | Canola | nucleus | 52.75 | 47.72 |
| CDY02185 | Canola | nucleus | 52.29 | 47.3 |
| CDY16832 | Canola | nucleus | 52.29 | 47.3 |
| CDY58690 | Canola | nucleus | 52.29 | 47.3 |
| EER97510 | Sorghum | nucleus | 54.13 | 46.64 |
| Zm00001d022088_P004 | Maize | nucleus | 55.05 | 46.51 |
| GSMUA_Achr8P04330_001 | Banana | nucleus | 51.83 | 46.12 |
| Zm00001d018667_P003 | Maize | nucleus | 56.42 | 45.39 |
| CDX79856 | Canola | nucleus | 18.35 | 44.94 |
| EER95753 | Sorghum | nucleus | 55.5 | 44.81 |
| TraesCS2D01G262700.1 | Wheat | nucleus | 55.5 | 44.65 |
| Os07t0108900-02 | Rice | nucleus | 54.59 | 44.57 |
| GSMUA_Achr3P02280_001 | Banana | nucleus | 53.67 | 44.49 |
| GSMUA_Achr3P30440_001 | Banana | nucleus | 46.79 | 44.35 |
| Os07t0605200-01 | Rice | nucleus | 50.46 | 44.18 |
| TraesCS2A01G261200.2 | Wheat | nucleus | 55.5 | 44.16 |
| TraesCS2B01G281000.1 | Wheat | nucleus | 55.5 | 44.16 |
| Zm00001d013259_P002 | Maize | nucleus | 56.42 | 44.09 |
| GSMUA_Achr10P... | Banana | nucleus | 56.88 | 43.51 |
| CDX86353 | Canola | nucleus | 49.54 | 43.37 |
| CDY00082 | Canola | nucleus | 49.08 | 43.15 |
| CDY45899 | Canola | nucleus | 49.08 | 42.97 |
| TraesCS2A01G174300.3 | Wheat | nucleus | 51.83 | 42.32 |
| TraesCS2B01G200800.1 | Wheat | nucleus | 51.83 | 42.32 |
| TraesCS2D01G181400.3 | Wheat | nucleus | 51.83 | 42.32 |
| Zm00001d034045_P003 | Maize | nucleus | 54.59 | 40.89 |
| Zm00001d007949_P001 | Maize | nucleus | 56.42 | 40.33 |
| HORVU5Hr1G095630.3 | Barley | nucleus, plastid | 56.42 | 40.07 |
| CDY48451 | Canola | nucleus | 27.98 | 39.87 |
| CDY34718 | Canola | nucleus | 45.87 | 39.68 |
| HORVU2Hr1G063800.7 | Barley | nucleus, plastid | 55.5 | 39.54 |
| CDY26462 | Canola | nucleus | 45.87 | 39.37 |
| CDY57524 | Canola | nucleus | 44.95 | 39.2 |
| CDY66153 | Canola | nucleus | 44.04 | 39.18 |
| GSMUA_Achr3P25280_001 | Banana | nucleus | 47.71 | 39.1 |
| CDY43239 | Canola | nucleus | 44.5 | 38.8 |
| CDY11824 | Canola | nucleus | 43.58 | 38.78 |
| CDX71922 | Canola | nucleus | 23.85 | 38.52 |
| CDY15724 | Canola | nucleus | 44.5 | 38.49 |
| CDY18911 | Canola | nucleus | 41.74 | 38.4 |
| CDX78653 | Canola | nucleus | 45.41 | 38.22 |
| CDX84935 | Canola | nucleus | 43.58 | 37.85 |
| CDX70651 | Canola | nucleus | 44.95 | 37.84 |
| CDX69499 | Canola | nucleus | 45.41 | 37.5 |
| CDY18912 | Canola | nucleus | 41.28 | 37.34 |
| CDY27603 | Canola | nucleus | 43.12 | 37.15 |
| CDX74754 | Canola | nucleus | 42.66 | 36.33 |
| CDY02978 | Canola | nucleus | 42.66 | 36.33 |
| CDY51202 | Canola | nucleus | 42.66 | 36.19 |
| CDY03905 | Canola | nucleus | 44.5 | 35.93 |
| CDY53885 | Canola | nucleus | 42.2 | 35.8 |
| Os12t0501700-00 | Rice | nucleus | 37.61 | 35.19 |
| CDX89097 | Canola | nucleus | 38.53 | 34.15 |
| CDY04164 | Canola | nucleus | 40.37 | 34.11 |
| KXG23502 | Sorghum | nucleus | 34.4 | 33.63 |
| CDX90394 | Canola | nucleus | 34.86 | 33.19 |
| CDX85287 | Canola | nucleus | 27.98 | 32.62 |
| CDX69345 | Canola | nucleus | 33.95 | 32.6 |
| CDX75686 | Canola | nucleus | 33.95 | 32.31 |
| CDX98597 | Canola | nucleus | 36.7 | 31.87 |
| CDY09267 | Canola | nucleus | 36.24 | 31.73 |
| CDY25613 | Canola | nucleus | 33.03 | 31.58 |
| CDX78909 | Canola | nucleus | 36.24 | 31.35 |
| CDX72465 | Canola | nucleus | 34.4 | 31.25 |
| CDY49287 | Canola | nucleus | 34.4 | 31.25 |
| CDX79857 | Canola | nucleus | 34.86 | 31.15 |
| CDX89496 | Canola | nucleus | 32.57 | 31.0 |
| CDX90741 | Canola | nucleus | 32.57 | 30.74 |
| CDX75412 | Canola | nucleus | 33.49 | 30.42 |
| Zm00001d023736_P001 | Maize | nucleus | 35.78 | 30.35 |
| CDX69036 | Canola | nucleus | 33.03 | 30.0 |
| CDY35780 | Canola | nucleus | 27.06 | 29.95 |
| CDX98330 | Canola | nucleus | 33.49 | 29.44 |
| CDY33113 | Canola | nucleus | 41.28 | 29.13 |
| CDY00589 | Canola | nucleus | 34.4 | 27.27 |
| CDY49254 | Canola | nucleus | 33.95 | 26.91 |
| CDX89005 | Canola | nucleus | 33.95 | 26.81 |
| CDX99406 | Canola | nucleus | 36.24 | 25.32 |
| CDY01574 | Canola | nucleus | 14.22 | 25.2 |
| CDY45709 | Canola | nucleus | 18.81 | 23.7 |
| CDY49686 | Canola | nucleus | 18.81 | 23.7 |
| CDY60297 | Canola | nucleus | 31.19 | 23.29 |
| CDY65347 | Canola | nucleus | 16.51 | 22.78 |
| CDY42485 | Canola | nucleus | 37.61 | 21.69 |
| CDY13236 | Canola | mitochondrion | 19.72 | 21.39 |
| CDX67765 | Canola | nucleus | 33.49 | 20.98 |
| CDX71166 | Canola | nucleus | 32.11 | 20.11 |
| CDY71878 | Canola | endoplasmic reticulum | 19.72 | 16.35 |
| CDY65346 | Canola | cytosol | 0.46 | 4.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078HAT6 | UniProt:A0A078HAT6 | unigene:Bna.2338 | EnsemblPlants:CDY34564 |
| ProteinID:CDY34564 | ProteinID:CDY34564.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00056989001 |
| InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 |
| PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF244 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EF3033 |
Description
BnaC03g56640DBnaC03g56640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HAT6]
Coordinates
chrLK032337:-:131194..134568
Molecular Weight (calculated)
25732.8 Da
IEP (calculated)
9.678
GRAVY (calculated)
-0.927
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGRVEMKR IENKINRQVT FSKRRAGLLK KAHEISILCD AEVSLIVFSH KGKLFEYSSE SCMEKVLEHY ERYSYAEKQL KVPDSHVNAQ TNWSVEYSRL
101: KAKIELLERN QRHYLGEDLE SISIKELQNL EQQLDTSLKH IRSRKNQLMH ESLNHLQRKE KEILEENSML AKQIRERESI LRTHQNQSEQ QNRSHHVAPQ
201: PQPQLNPYMA SSPFLNMG
101: KAKIELLERN QRHYLGEDLE SISIKELQNL EQQLDTSLKH IRSRKNQLMH ESLNHLQRKE KEILEENSML AKQIRERESI LRTHQNQSEQ QNRSHHVAPQ
201: PQPQLNPYMA SSPFLNMG
001: MGRGRVELKR IENKINRQVT FSKRRTGLLK KAQEISVLCD AEVSLIVFSH KGKLFEYSSE SCMEKVLERY ERYSYAERQL IAPDSHVNAQ TNWSMEYSRL
101: KAKIELLERN QRHYLGEELE PMSLKDLQNL EQQLETALKH IRSRKNQLMN ESLNHLQRKE KEIQEENSML TKQIKERENI LRTKQTQCEQ LNRSVDDVPQ
201: PQPFQHPHLY MIAHQTSPFL NMGGLYQEED QTAMRRNNLD LTLEPIYNYL GCYAA
101: KAKIELLERN QRHYLGEELE PMSLKDLQNL EQQLETALKH IRSRKNQLMN ESLNHLQRKE KEIQEENSML TKQIKERENI LRTKQTQCEQ LNRSVDDVPQ
201: PQPFQHPHLY MIAHQTSPFL NMGGLYQEED QTAMRRNNLD LTLEPIYNYL GCYAA
Arabidopsis Description
CALTranscription factor CAULIFLOWER [Source:UniProtKB/Swiss-Prot;Acc:Q39081]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.