CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90741	Canola	nucleus	88.0	9.52
CDY71878	Canola	endoplasmic reticulum	100.0	9.51
CDY60297	Canola	nucleus	92.0	7.88
CDY01574	Canola	nucleus	20.0	4.07
CDY13236	Canola	mitochondrion	20.0	2.49
VIT_17s0000g01230.t01	Wine grape	nucleus	20.0	2.13
CDX98597	Canola	nucleus	20.0	1.99
CDX78909	Canola	nucleus	20.0	1.98
CDY49686	Canola	nucleus	12.0	1.73
CDY45709	Canola	nucleus	12.0	1.73
CDY09267	Canola	nucleus	16.0	1.61
CDX99406	Canola	nucleus	20.0	1.6
CDY57524	Canola	nucleus	16.0	1.6
CDY43239	Canola	nucleus	16.0	1.6
CDY34718	Canola	nucleus	16.0	1.59
CDY26462	Canola	nucleus	16.0	1.57
CDX70651	Canola	nucleus	16.0	1.54
CDX78653	Canola	nucleus	16.0	1.54
CDX69499	Canola	nucleus	16.0	1.52
CDY42841	Canola	nucleus	12.0	1.25
CDY47002	Canola	nucleus	12.0	1.24
CDY58690	Canola	nucleus	12.0	1.24
CDY02185	Canola	nucleus	12.0	1.24
CDX79857	Canola	nucleus	12.0	1.23
CDY66153	Canola	nucleus	12.0	1.22
CDY11824	Canola	nucleus	12.0	1.22
CDX98330	Canola	nucleus	12.0	1.21
CDY27603	Canola	nucleus	12.0	1.19
CDY49254	Canola	nucleus	12.0	1.09
CDY00589	Canola	nucleus	12.0	1.09
CDX89005	Canola	nucleus	12.0	1.09
CDY35780	Canola	nucleus	8.0	1.02
CDX67765	Canola	nucleus	12.0	0.86
CDY18911	Canola	nucleus	8.0	0.84
CDY16832	Canola	nucleus	8.0	0.83
CDY18912	Canola	nucleus	8.0	0.83
CDX89097	Canola	nucleus	8.0	0.81
CDY00082	Canola	nucleus	8.0	0.81
CDY45899	Canola	nucleus	8.0	0.8
CDX84935	Canola	nucleus	8.0	0.8
CDY15724	Canola	nucleus	8.0	0.79
CDY42485	Canola	nucleus	12.0	0.79
CDY02978	Canola	nucleus	8.0	0.78
CDX74754	Canola	nucleus	8.0	0.78
CDY51202	Canola	nucleus	8.0	0.78
CDY53885	Canola	nucleus	8.0	0.78
CDY04164	Canola	nucleus	8.0	0.78
CDY03905	Canola	nucleus	8.0	0.74
CDY33113	Canola	nucleus	8.0	0.65
CDX85287	Canola	nucleus	4.0	0.53
PGSC0003DMT400039313	Potato	nucleus	4.0	0.5
CDY34564	Canola	nucleus	4.0	0.46
CDY36077	Canola	nucleus	4.0	0.45
CDX69345	Canola	nucleus	4.0	0.44
CDX90394	Canola	nucleus	4.0	0.44
CDX86353	Canola	nucleus	4.0	0.4
CDY33554	Canola	nucleus	4.0	0.39
CDX95960	Canola	nucleus	4.0	0.39
CDY65811	Canola	nucleus	4.0	0.39
CDY04265	Canola	nucleus	4.0	0.36
CDY07357	Canola	nucleus	4.0	0.35
CDY49287	Canola	nucleus	0.0	0.0
CDX79856	Canola	nucleus	0.0	0.0
CDY48451	Canola	nucleus	0.0	0.0
CDX89496	Canola	nucleus	0.0	0.0
CDX75686	Canola	nucleus	0.0	0.0
CDX75412	Canola	nucleus	0.0	0.0
CDX71166	Canola	nucleus	0.0	0.0
CDY60686	Canola	cytosol, nucleus, plastid	0.0	0.0
CDY65347	Canola	nucleus	0.0	0.0
CDY25613	Canola	nucleus	0.0	0.0
CDY19977	Canola	nucleus	0.0	0.0
CDX69036	Canola	nucleus	0.0	0.0
CDY72391	Canola	nucleus	0.0	0.0
CDX71922	Canola	nucleus	0.0	0.0
Solyc03g019710.2.1	Tomato	nucleus	0.0	0.0
CDX72465	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:CDY65346	EnsemblPlantsGene:GSBRNA2T00045662001	ProteinID:CDY65346	ProteinID:CDY65346.1	UniParc:UPI0004EEC9E6	UniProt:A0A078JHZ9
MapMan:35.2	:	:	:	:	:

Description

BnaCnng46730DBnaCnng46730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHZ9]

Coordinates

chrLK034750:-:203..280

Molecular Weight (calculated)

2463.8 Da

IEP (calculated)

7.520

GRAVY (calculated)

-0.664

Length

25 amino acids

Sequence
(BLAST)

1: MTTGSGSGAG HGCSYSDPDK KIHLG

Best Arabidopsis Sequence Match ( AT5G42230.1 )
(BLAST)

001: MAIVSLRDVA MVMVTVQVFA RGYPETDLVV RLPGQPKVVF RQYAGYVDLD LNAGRSLFYY FVEAEKHPDT KPLTLWLNGG PGCSSVGGGA FTELGPFYPT
101: GYGRGLRINS MSWNKASNLL FVDSPAGVGW SYSNRSSDYN AGDKSAASDM LVFLLRWFDK FPELKSHDLF LTGESYAGHY IPQLADAILS YNSRSSGFKF
201: NIKGIAIGNP LLKLDRDIPA VYEFFWSHGM ISEVVGRTIK IQCDFSHYTY AYPHNVSDAC NDAIREAGDI TTEYVNTFDV LPDLCYPSIA LQELRLKQMA
301: TKMSMGVDVC MNYERQFYLN IPEVQMALHA NRTNLPYSWS LCSNLLNYSA IDVNTNMLPT LKRIIQNKIP VRIFSGDQDS VVPFLGTRTI VGELANDLNF
401: KTTVPYGVWF HKRQVGGWAI EYGNLLTFAT VRGAAHAVAY TQPSRALHLF STFLRGQRLP NKTDIAMHD

Arabidopsis Description

SCPL41Serine carboxypeptidase-like 41 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH06]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.