Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g019710.2.1 | Tomato | nucleus | 82.0 | 92.66 |
| VIT_17s0000g01230.t01 | Wine grape | nucleus | 63.5 | 54.04 |
| PGSC0003DMT400013248 | Potato | nucleus | 42.5 | 36.64 |
| PGSC0003DMT400065614 | Potato | nucleus | 42.0 | 36.21 |
| PGSC0003DMT400004875 | Potato | nucleus | 33.0 | 35.11 |
| PGSC0003DMT400072891 | Potato | nucleus | 39.5 | 32.64 |
| PGSC0003DMT400073134 | Potato | nucleus | 39.5 | 31.85 |
| PGSC0003DMT400063313 | Potato | nucleus | 39.0 | 31.45 |
| PGSC0003DMT400010451 | Potato | nucleus | 38.5 | 30.8 |
| PGSC0003DMT400000383 | Potato | nucleus | 39.0 | 30.59 |
| PGSC0003DMT400063315 | Potato | nucleus | 37.5 | 30.49 |
| PGSC0003DMT400072888 | Potato | nucleus | 37.0 | 30.33 |
| PGSC0003DMT400056363 | Potato | nucleus | 36.5 | 30.29 |
| PGSC0003DMT400003483 | Potato | nucleus | 36.5 | 29.67 |
| PGSC0003DMT400003485 | Potato | nucleus | 36.0 | 29.15 |
| PGSC0003DMT400044552 | Potato | nucleus | 36.0 | 28.35 |
| PGSC0003DMT400068325 | Potato | nucleus | 33.0 | 28.21 |
| CDY65347 | Canola | nucleus | 20.0 | 25.32 |
| PGSC0003DMT400024193 | Potato | nucleus | 16.0 | 17.88 |
| PGSC0003DMT400005159 | Potato | nucleus | 17.0 | 16.04 |
| CDY65346 | Canola | cytosol | 0.5 | 4.0 |
Protein Annotations
| EntrezGene:102588157 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | UniProt:M1B837 | InterPro:MADS_MEF2-like | PFAM:PF00319 |
| PFAM:PF01486 | EnsemblPlantsGene:PGSC0003DMG401015205 | PGSC:PGSC0003DMG401015205 | EnsemblPlants:PGSC0003DMT400039313 | PRINTS:PR00404 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF146 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000296FB33 | RefSeq:XP_015166003.1 | SEG:seg | : |
Description
TDR8 protein [Source:PGSC_GENE;Acc:PGSC0003DMG401015205]
Coordinates
chr3:-:50357307..50360580
Molecular Weight (calculated)
23320.4 Da
IEP (calculated)
10.578
GRAVY (calculated)
-0.704
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVELKR IENQTNRQVT FSKRRNGLLK KAYELSILCD AEVALLLFSP SGKAYNFASH DIERTILRYK NEVGLSKNSD QGLRAMEVWR TKIDDMTRTI
101: HELEARDKHL AGEELSSLGM KELKQLERQL RIGVERIRSK KRRIISEHIH GLKRRHKILH EENIHLQKQV RLSEIEGSSR ILDSEASELL SKGRRIIYDL
101: HELEARDKHL AGEELSSLGM KELKQLERQL RIGVERIRSK KRRIISEHIH GLKRRHKILH EENIHLQKQV RLSEIEGSSR ILDSEASELL SKGRRIIYDL
001: MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN NIRSTIERYK KACSDSTNTS TVQEINAAYY QQESAKLRQQ
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKHELLLVEI ENAQKREIEL DNENIYLRTK VAEVERYQQH HHQMVSGSEI NAIEALASRN
201: YFAHSIMTAG SGSGNGGSYS DPDKKILHLG
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKHELLLVEI ENAQKREIEL DNENIYLRTK VAEVERYQQH HHQMVSGSEI NAIEALASRN
201: YFAHSIMTAG SGSGNGGSYS DPDKKILHLG
Arabidopsis Description
STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.