Factsheet for PGSC0003DMT400004875

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063315	Potato	nucleus	52.66	40.24
PGSC0003DMT400056363	Potato	nucleus	49.47	38.59
PGSC0003DMT400072891	Potato	nucleus	48.94	38.02
EER97012	Sorghum	nucleus	48.4	37.45
HORVU5Hr1G076400.1	Barley	nucleus	50.0	37.3
TraesCS5D01G294500.1	Wheat	nucleus	50.0	37.3
TraesCS5B01G286100.2	Wheat	nucleus	50.0	37.3
TraesCS5A01G286800.1	Wheat	nucleus	50.0	37.3
PGSC0003DMT400003483	Potato	nucleus	48.4	36.99
GSMUA_Achr11P...	Banana	nucleus	45.74	36.6
Os09t0507200-01	Rice	nucleus	47.87	36.29
Zm00001d006094_P001	Maize	nucleus	48.4	36.26
EES15309	Sorghum	nucleus	46.28	36.1
Zm00001d021057_P001	Maize	nucleus	45.74	34.82
TraesCS7B01G158600.1	Wheat	nucleus	45.21	34.55
TraesCS7D01G261600.1	Wheat	nucleus	45.21	34.27
TraesCS7A01G260600.1	Wheat	nucleus	45.21	34.27
Os08t0531700-01	Rice	nucleus	45.21	34.14
Zm00001d031620_P001	Maize	nucleus	46.28	34.12
PGSC0003DMT400039313	Potato	nucleus	35.11	33.0
HORVU7Hr1G054220.3	Barley	nucleus	44.68	32.81
PGSC0003DMT400000383	Potato	nucleus	40.96	30.2
PGSC0003DMT400063313	Potato	nucleus	38.83	29.44
PGSC0003DMT400010451	Potato	nucleus	38.83	29.2
PGSC0003DMT400068325	Potato	nucleus	36.17	29.06
PGSC0003DMT400072888	Potato	nucleus	37.23	28.69
PGSC0003DMT400013248	Potato	nucleus	35.11	28.45
PGSC0003DMT400065614	Potato	nucleus	34.04	27.59
PGSC0003DMT400003485	Potato	nucleus	36.17	27.53
PGSC0003DMT400073134	Potato	nucleus	35.11	26.61
PGSC0003DMT400044552	Potato	nucleus	34.04	25.2
PGSC0003DMT400024193	Potato	nucleus	12.23	12.85
PGSC0003DMT400005159	Potato	nucleus	13.3	11.79

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	UniProt:M0ZP50	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	EnsemblPlantsGene:PGSC0003DMG400001938
PGSC:PGSC0003DMG400001938	EnsemblPlants:PGSC0003DMT400004875	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF352	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI00029583E8	:	:	:	:

Description

MADS-box transcription factor FBP4 [Source:PGSC_GENE;Acc:PGSC0003DMG400001938]

Coordinates

chr00:-:12622815..12626042

Molecular Weight (calculated)

21999.1 Da

IEP (calculated)

9.342

GRAVY (calculated)

-0.136

Length

188 amino acids

Sequence
(BLAST)

001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCE AEVALIIFSN RGKLYEFCST SRHILGEDLS QLNTKDLEQL ERQLDSSLRQ IRSRRVCSML
101: LIGYNLFVNF RLSDHKSLLL MSDDNSVVEL EIYAKTIQAI LYYRMSDLKF ELETLNPLCK YTNILPCVNG VQQFIYKQTF MLLPYLVQ

Best Arabidopsis Sequence Match ( AT2G03710.3 )
(BLAST)

001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KVAIGIFYRK KLKPFVI

Arabidopsis Description

AGL3Agamous-like MADS-box protein AGL3 [Source:UniProtKB/Swiss-Prot;Acc:P29383]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.