Factsheet for PGSC0003DMT400072891

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000028
PGSC0003DMT400003073
PGSC0003DMT400010451
PGSC0003DMT400026576
PGSC0003DMT400034833
PGSC0003DMT400042062
PGSC0003DMT400063313
PGSC0003DMT400072888
PGSC0003DMT400089615

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G03710.1	PGSC0003DMT400003073	AT1G31630.1	15805477
AT2G03710.1	PGSC0003DMT400089615	AT1G31630.1	15805477
AT2G03710.1	PGSC0003DMT400003073	AT1G31640.1	15805477
AT2G03710.1	PGSC0003DMT400089615	AT1G31640.1	15805477
AT2G03710.1	PGSC0003DMT400072888	AT1G69120.1	15805477
AT2G03710.1	PGSC0003DMT400000028	AT2G45660.1	15805477
AT2G03710.1	PGSC0003DMT400026576	AT2G45660.1	15805477
AT2G03710.1	PGSC0003DMT400034833	AT4G14640.1	17360592
AT2G03710.1	PGSC0003DMT400042062	AT4G14640.1	17360592
AT2G03710.1	PGSC0003DMT400010451	AT5G60910.1	15805477
AT2G03710.1	PGSC0003DMT400063313	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g012020.2.1	Tomato	nucleus	95.45	95.45
KRH70973	Soybean	nucleus	63.64	63.11
PGSC0003DMT400063315	Potato	nucleus	62.4	61.38
KRH75123	Soybean	nucleus	61.98	60.98
VIT_01s0011g00110.t01	Wine grape	nucleus	60.74	60.49
PGSC0003DMT400056363	Potato	nucleus	56.61	56.85
PGSC0003DMT400003483	Potato	nucleus	57.44	56.5
CDY02978	Canola	nucleus	56.61	53.52
CDY04164	Canola	nucleus	56.61	53.1
CDY51202	Canola	nucleus	56.2	52.92
AT2G03710.1	Thale cress	nucleus	56.2	52.71
Bra025126.1-P	Field mustard	nucleus	55.79	52.53
Bra026543.1-P	Field mustard	nucleus	56.2	50.56
PGSC0003DMT400004875	Potato	nucleus	38.02	48.94
Bra017376.1-P	Field mustard	nucleus	47.93	47.74
PGSC0003DMT400000383	Potato	nucleus	48.76	46.27
CDY33113	Canola	nucleus	56.2	44.01
PGSC0003DMT400013248	Potato	nucleus	40.08	41.81
PGSC0003DMT400065614	Potato	nucleus	39.67	41.38
PGSC0003DMT400010451	Potato	nucleus	42.56	41.2
PGSC0003DMT400063313	Potato	nucleus	42.15	41.13
PGSC0003DMT400072888	Potato	nucleus	41.32	40.98
PGSC0003DMT400068325	Potato	nucleus	38.84	40.17
PGSC0003DMT400003485	Potato	nucleus	40.5	39.68
PGSC0003DMT400039313	Potato	nucleus	32.64	39.5
CDY45709	Canola	nucleus	27.27	38.15
CDY49686	Canola	nucleus	26.86	37.57
PGSC0003DMT400073134	Potato	nucleus	37.19	36.29
PGSC0003DMT400044552	Potato	nucleus	35.12	33.46
PGSC0003DMT400024193	Potato	nucleus	15.7	21.23
PGSC0003DMT400005159	Potato	nucleus	15.29	17.45

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0010076	GO:GO:0045944	GO:GO:0046983	GO:GO:0048440	GO:GO:0048441
GO:GO:0048442	GO:GO:0048443	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M1CR53
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	EnsemblPlantsGene:PGSC0003DMG400028359	PGSC:PGSC0003DMG400028359	EnsemblPlants:PGSC0003DMT400072891
PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF352
SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000294DC1B

Description

MADS-box transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400028359]

Coordinates

chr5:+:757295..763364

Molecular Weight (calculated)

27918.0 Da

IEP (calculated)

8.442

GRAVY (calculated)

-0.783

Length

242 amino acids

Sequence
(BLAST)

001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALIIFSS RGKLYEFCSN SSISKTLERY HRYNYGTLEG TQTSPDSQNN YQEYLKLKAR
101: VEVLQQSQRH LLGEDLGQLG TKDLEQLERQ LDSSLRQIRS TKTQHILDQL AELQQKEQSL TEMNKSLRIK LEELGVAFQT SWHSGEQSVQ YRHEQPSQHE
201: GFFQHVNCNN TMPISYRYDN VQPENAAPST HDAAGVVPGW ML

Best Arabidopsis Sequence Match ( AT2G03710.2 )
(BLAST)

001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEDSDAALT QSFWGSSAAE QQQQHQQQQQ
201: GMSSYQSNPP IQEAGFFKPL QGNVALQMSH YNHNPANATN SATTSQNVNG FFPGWMV

Arabidopsis Description

AGL3Agamous-like MADS-box protein AGL3 [Source:UniProtKB/Swiss-Prot;Acc:P29383]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.