Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400077258 | Potato | nucleus | 86.55 | 52.82 |
| PGSC0003DMT400097522 | Potato | cytosol, extracellular, mitochondrion, nucleus | 24.79 | 50.43 |
| PGSC0003DMT400065010 | Potato | vacuole | 37.82 | 45.0 |
| PGSC0003DMT400091747 | Potato | plastid | 27.73 | 43.42 |
| PGSC0003DMT400085093 | Potato | extracellular, plastid, vacuole | 36.13 | 42.79 |
| PGSC0003DMT400061722 | Potato | plastid | 17.23 | 39.42 |
| PGSC0003DMT400094378 | Potato | nucleus | 23.11 | 35.26 |
| PGSC0003DMT400085114 | Potato | cytosol, endoplasmic reticulum, nucleus | 39.08 | 32.98 |
| PGSC0003DMT400086919 | Potato | nucleus | 32.35 | 31.3 |
| PGSC0003DMT400085256 | Potato | nucleus | 48.32 | 30.42 |
| PGSC0003DMT400094113 | Potato | cytosol | 21.43 | 29.48 |
| PGSC0003DMT400086447 | Potato | cytosol | 23.11 | 28.65 |
| PGSC0003DMT400085623 | Potato | nucleus | 22.27 | 26.5 |
| PGSC0003DMT400061724 | Potato | mitochondrion, nucleus | 41.6 | 25.85 |
| PGSC0003DMT400088654 | Potato | nucleus | 32.35 | 23.55 |
| PGSC0003DMT400090953 | Potato | nucleus | 32.77 | 23.21 |
| PGSC0003DMT400090516 | Potato | nucleus | 17.23 | 23.16 |
| PGSC0003DMT400095755 | Potato | nucleus | 33.19 | 22.97 |
| PGSC0003DMT400061726 | Potato | nucleus | 31.09 | 22.63 |
| PGSC0003DMT400088489 | Potato | nucleus | 18.49 | 20.66 |
| PGSC0003DMT400095062 | Potato | nucleus | 23.11 | 19.5 |
| PGSC0003DMT400095417 | Potato | cytosol | 10.08 | 18.75 |
| PGSC0003DMT400087890 | Potato | cytosol | 7.14 | 15.18 |
| PGSC0003DMT400089454 | Potato | nucleus | 15.55 | 15.1 |
| PGSC0003DMT400088008 | Potato | nucleus | 12.18 | 15.03 |
| PGSC0003DMT400090586 | Potato | nucleus | 13.87 | 14.04 |
| PGSC0003DMT400073719 | Potato | nucleus | 15.13 | 13.79 |
| PGSC0003DMT400095426 | Potato | mitochondrion | 17.65 | 12.03 |
| TraesCS6B01G391600.1 | Wheat | nucleus | 7.14 | 6.94 |
| TraesCS6D01G342000.1 | Wheat | nucleus | 6.72 | 6.64 |
| TraesCS6B01G391700.1 | Wheat | nucleus | 6.72 | 6.53 |
| CDY05205 | Canola | cytosol, mitochondrion, nucleus | 4.2 | 6.13 |
| CDX80577 | Canola | mitochondrion, nucleus | 7.56 | 5.98 |
| AT1G31630.1 | Thale cress | mitochondrion | 8.4 | 5.9 |
| TraesCS6D01G341700.1 | Wheat | nucleus | 5.88 | 5.81 |
| TraesCS7B01G484100.1 | Wheat | mitochondrion, nucleus | 5.88 | 5.81 |
| AT5G26580.1 | Thale cress | nucleus | 8.4 | 5.8 |
| CDX88231 | Canola | nucleus | 6.72 | 5.8 |
| PGSC0003DMT400089787 | Potato | cytosol | 4.2 | 5.75 |
| KXG38099 | Sorghum | plastid | 7.56 | 5.71 |
| CDY05515 | Canola | nucleus | 8.82 | 5.57 |
| Bra020525.1-P | Field mustard | nucleus | 9.24 | 5.57 |
| EER91288 | Sorghum | mitochondrion, nucleus | 7.14 | 5.41 |
| TraesCS7D01G550600.1 | Wheat | nucleus | 5.46 | 5.39 |
| TraesCS6A01G359100.1 | Wheat | mitochondrion | 5.88 | 5.36 |
| TraesCS6D01G342100.1 | Wheat | mitochondrion | 5.88 | 5.36 |
| CDY05333 | Canola | nucleus | 8.4 | 5.31 |
| Bra020524.1-P | Field mustard | nucleus | 7.98 | 5.28 |
| CDY05514 | Canola | nucleus | 7.98 | 5.28 |
| Bra020550.1-P | Field mustard | nucleus | 8.4 | 5.26 |
| HORVU6Hr1G085540.1 | Barley | mitochondrion | 5.04 | 5.24 |
| Os03t0582400-01 | Rice | nucleus | 5.46 | 5.22 |
| Bra009911.1-P | Field mustard | mitochondrion, nucleus | 7.98 | 5.22 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 5.04 | 5.17 |
| TraesCS7A01G551000.1 | Wheat | nucleus | 6.72 | 5.11 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 5.04 | 5.08 |
| TraesCS7D01G551000.1 | Wheat | nucleus | 5.04 | 5.08 |
| AT5G27960.1 | Thale cress | nucleus | 6.72 | 5.0 |
| HORVU6Hr1G085570.1 | Barley | mitochondrion, nucleus | 5.46 | 5.0 |
| TraesCS7B01G484500.1 | Wheat | nucleus | 5.04 | 4.98 |
| TraesCS7B01G299400.1 | Wheat | nucleus | 6.72 | 4.95 |
| AT5G26650.1 | Thale cress | nucleus | 7.56 | 4.92 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 5.04 | 4.9 |
| Zm00001d048894_P001 | Maize | mitochondrion | 5.04 | 4.86 |
| TraesCS7D01G536700.1 | Wheat | nucleus | 6.3 | 4.79 |
| TraesCS2B01G146100.1 | Wheat | nucleus | 7.14 | 4.68 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 5.46 | 4.68 |
| AT1G65330.1 | Thale cress | nucleus | 5.46 | 4.66 |
| TraesCS7D01G393000.1 | Wheat | nucleus | 6.3 | 4.64 |
| AT3G05860.1 | Thale cress | nucleus | 5.04 | 4.62 |
| CDY67043 | Canola | nucleus | 7.56 | 4.6 |
| AT5G26630.1 | Thale cress | nucleus | 4.2 | 4.59 |
| TraesCS6D01G342700.1 | Wheat | nucleus | 5.88 | 4.53 |
| Zm00001d016791_P001 | Maize | mitochondrion | 5.46 | 4.53 |
| HORVU6Hr1G085670.1 | Barley | nucleus | 6.3 | 4.52 |
| TraesCS6A01G022700.1 | Wheat | mitochondrion | 4.2 | 4.41 |
| KXG28888 | Sorghum | nucleus | 4.62 | 4.31 |
| KXG28890 | Sorghum | mitochondrion | 4.62 | 4.31 |
| EES06917 | Sorghum | mitochondrion, nucleus | 4.62 | 4.25 |
| PGSC0003DMT400091650 | Potato | nucleus | 4.62 | 4.25 |
| TraesCS6B01G391800.1 | Wheat | mitochondrion | 4.62 | 4.21 |
| TraesCS6B01G392600.1 | Wheat | nucleus | 5.46 | 4.19 |
| CDY71564 | Canola | nucleus | 5.88 | 4.13 |
| AT1G31640.1 | Thale cress | mitochondrion | 7.98 | 4.09 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 4.2 | 4.03 |
| KXG28889 | Sorghum | nucleus | 4.2 | 4.0 |
| TraesCS6D01G024300.1 | Wheat | mitochondrion | 3.78 | 3.96 |
| AT1G65300.1 | Thale cress | nucleus | 4.62 | 3.96 |
| AT2G28700.1 | Thale cress | nucleus | 5.46 | 3.95 |
| Bra020552.1-P | Field mustard | nucleus | 5.46 | 3.81 |
| TraesCS6A01G020900.1 | Wheat | mitochondrion | 3.36 | 3.79 |
| AT1G59930.1 | Thale cress | cytosol | 2.1 | 3.79 |
| CDY27735 | Canola | nucleus | 4.2 | 3.75 |
| AT5G35120.1 | Thale cress | cytosol | 1.68 | 3.74 |
| TraesCS7A01G398800.1 | Wheat | nucleus | 5.04 | 3.73 |
| KXG32310 | Sorghum | nucleus | 3.78 | 3.72 |
| CDY38696 | Canola | nucleus | 4.2 | 3.6 |
| TraesCS2D01G150900.1 | Wheat | mitochondrion | 4.62 | 3.58 |
| TraesCS6A01G359700.1 | Wheat | nucleus | 3.36 | 3.52 |
| TraesCS6B01G027900.1 | Wheat | nucleus | 3.36 | 3.52 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 3.36 | 3.48 |
| Bra039404.1-P | Field mustard | nucleus | 4.2 | 3.31 |
| HORVU7Hr1G121600.1 | Barley | nucleus | 2.52 | 3.24 |
| TraesCS7B01G484000.1 | Wheat | nucleus | 2.52 | 3.24 |
| TraesCS7D01G550500.1 | Wheat | nucleus | 2.52 | 3.24 |
| Bra020555.1-P | Field mustard | nucleus | 2.94 | 3.24 |
| CDY05540 | Canola | nucleus | 2.94 | 3.24 |
| CDY25000 | Canola | nucleus | 2.94 | 3.24 |
| TraesCS2A01G146400.1 | Wheat | mitochondrion | 4.62 | 3.09 |
| TraesCS6D01G023800.1 | Wheat | mitochondrion | 2.94 | 3.08 |
| Bra035448.1-P | Field mustard | nucleus | 3.36 | 3.03 |
| GSMUA_AchrUn_... | Banana | nucleus | 2.94 | 3.0 |
| TraesCS7A01G561000.1 | Wheat | nucleus | 2.94 | 2.99 |
| TraesCS7D01G548500.1 | Wheat | plastid | 2.94 | 2.98 |
| KXG28893 | Sorghum | nucleus | 2.1 | 2.98 |
| HORVU2Hr1G022060.1 | Barley | nucleus, plastid | 2.52 | 2.93 |
| CDY18830 | Canola | nucleus | 4.2 | 2.91 |
| OQU83806 | Sorghum | nucleus | 2.1 | 2.86 |
| TraesCS6B01G028300.1 | Wheat | mitochondrion | 2.52 | 2.84 |
| TraesCS2D01G128000.1 | Wheat | nucleus | 2.52 | 2.83 |
| KXG28892 | Sorghum | nucleus | 2.1 | 2.7 |
| Bra035449.1-P | Field mustard | nucleus | 2.94 | 2.65 |
| TraesCS2B01G171700.1 | Wheat | mitochondrion | 2.1 | 2.62 |
| TraesCS7A01G559500.1 | Wheat | nucleus | 2.1 | 2.62 |
| TraesCS3B01G155200.1 | Wheat | cytosol | 2.1 | 2.56 |
| TraesCS7B01G485400.1 | Wheat | nucleus | 2.52 | 2.56 |
| TraesCS3A01G137500.1 | Wheat | cytosol | 2.1 | 2.51 |
| CDY70782 | Canola | nucleus | 3.36 | 2.48 |
| Bra040248.1-P | Field mustard | nucleus | 4.2 | 2.42 |
| TraesCS3B01G159600.1 | Wheat | nucleus | 2.52 | 2.39 |
| GSMUA_Achr3P05500_001 | Banana | nucleus | 2.1 | 2.26 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 2.1 | 2.16 |
| TraesCS3A01G312600.1 | Wheat | nucleus | 2.1 | 1.99 |
| EES10067 | Sorghum | mitochondrion | 1.68 | 1.94 |
| TraesCS7B01G484600.1 | Wheat | nucleus | 1.26 | 1.83 |
| OQU83804 | Sorghum | mitochondrion | 1.68 | 1.7 |
| TraesCS6D01G024000.1 | Wheat | mitochondrion, nucleus | 1.26 | 1.63 |
| TraesCS3D01G138400.1 | Wheat | cytosol | 1.26 | 1.58 |
| CDX80580 | Canola | nucleus | 1.26 | 1.49 |
| PGSC0003DMT400086956 | Potato | nucleus | 0.84 | 1.36 |
| CDX88234 | Canola | nucleus | 0.84 | 1.09 |
| Bra009913.1-P | Field mustard | nucleus | 0.84 | 0.99 |
| TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 0.42 | 0.64 |
| CDY71896 | Canola | nucleus | 0.42 | 0.58 |
| TraesCS6B01G028100.1 | Wheat | mitochondrion | 0.42 | 0.53 |
| Bra005166.1-P | Field mustard | mitochondrion, nucleus | 0.0 | 0.0 |
| CDY64992 | Canola | mitochondrion, nucleus | 0.0 | 0.0 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 0.0 | 0.0 |
| HORVU6Hr1G003730.1 | Barley | nucleus | 0.0 | 0.0 |
| PGSC0003DMT400003073 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400089615 | EnsemblPlantsGene:PGSC0003DMG400039186 | PGSC:PGSC0003DMG400039186 | UniParc:UPI0002964659 | UniProt:M1DII8 | MapMan:35.2 |
Description
Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400039186]
Coordinates
chr6:-:32026492..32027208
Molecular Weight (calculated)
25859.3 Da
IEP (calculated)
4.549
GRAVY (calculated)
-0.124
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDEKVCTSN VPQPIVEPII LGGTNYERSR ATLLGPVGSL LSMIPLESPS IVPGGTNFEK TRPPLFVPNV APPIVPFSAS LKVTQQMVHL ADPSRTPIQM
101: VPLMDTSQVN PSPLFSSQMF PPMAPYLVST IPQLMAIRRT PGRAFSIPST TMFSLMPSPM IAPPACSPLT PQMDPSTDLP LIGESMLINN HQNYTANSPQ
201: SPPLSELLNW NNDDVVTLLE DPSLHNINVQ DPNRTDNT
101: VPLMDTSQVN PSPLFSSQMF PPMAPYLVST IPQLMAIRRT PGRAFSIPST TMFSLMPSPM IAPPACSPLT PQMDPSTDLP LIGESMLINN HQNYTANSPQ
201: SPPLSELLNW NNDDVVTLLE DPSLHNINVQ DPNRTDNT
001: MDDRHEGDHH DIEVEGGALH GFERKISGIL DDGSVGFRQP LLARNRKNTT SQIAIVGANT CPIESLDYEI FENDFFKQDW RSRKKIEILQ YTFLKWALAF
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK
101: LIGLATGLVG FLNNLGVENI AGFKLLLIGN LMLKEKYFQA FFAFAGCNLI LATAAASLCA FIAPAAAGSG IPEVKAYLNG IDAYSILAPS TLFVKIFGSI
201: FGVAAGFVVG KEGPMVHTGA CIANLLGQGG SKKYRLTWKW LRFFKNDRDR RDLITCGAAA GVAAAFRAPV GGVLFALEEA ASWWRNALLW RTFFTTAVVA
301: VVLRSLIEFC RSGRCGLFGK GGLIMFDVNS GPVLYSTPDL LAIVFLGVIG GVLGSLYNYL VDKVLRTYSI INEKGPRFKI MLVMAVSILS SCCAFGLPWL
401: SQCTPCPIGI EEGKCPSVGR SSIYKSFQCP PNHYNDLSSL LLNTNDDAIR NLFTSRSENE FHISTLAIFF VAVYCLGIIT YGIAIPSGLF IPVILAGASY
501: GRLVGRLLGP VSQLDVGLFS LLGAASFLGG TMRMTVSLCV ILLELTNNLL MLPLVMLVLL ISKTVADCFN RGVYDQIVTM KGLPYMEDHA EPYMRNLVAK
601: DVVSGALISF SRVEKVGVIW QALKMTRHNG FPVIDEPPFT EASELCGIAL RSHLLVLLQG KKFSKQRTTF GSQILRSCKA RDFGKAGLGK GLKIEDLDLS
701: EEEMEMYVDL HPITNTSPYT VLETLSLAKA AILFRQLGLR HLCVVPKTPG RPPIVGILTR HDFMPEHVLG LYPHIDPLK
Arabidopsis Description
CLC-CChloride channel protein CLC-c [Source:UniProtKB/Swiss-Prot;Acc:Q96282]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.