Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400086956 | Potato | nucleus | 37.96 | 63.27 |
PGSC0003DMT400089787 | Potato | cytosol | 37.55 | 52.87 |
PGSC0003DMT400003073 | Potato | cytosol | 22.04 | 50.0 |
PGSC0003DMT400088489 | Potato | nucleus | 39.18 | 45.07 |
GSMUA_Achr2P18410_001 | Banana | nucleus | 7.35 | 43.9 |
PGSC0003DMT400090586 | Potato | nucleus | 41.22 | 42.98 |
PGSC0003DMT400087890 | Potato | cytosol | 17.55 | 38.39 |
PGSC0003DMT400088654 | Potato | nucleus | 50.61 | 37.92 |
PGSC0003DMT400073719 | Potato | nucleus | 39.18 | 36.78 |
PGSC0003DMT400095755 | Potato | nucleus | 50.61 | 36.05 |
PGSC0003DMT400090953 | Potato | nucleus | 49.39 | 36.01 |
PGSC0003DMT400091650 | Potato | nucleus | 37.14 | 35.14 |
PGSC0003DMT400077258 | Potato | nucleus | 55.92 | 35.13 |
PGSC0003DMT400061724 | Potato | mitochondrion, nucleus | 54.29 | 34.73 |
PGSC0003DMT400095417 | Potato | cytosol | 17.14 | 32.81 |
PGSC0003DMT400085256 | Potato | nucleus | 49.8 | 32.28 |
PGSC0003DMT400095062 | Potato | nucleus | 36.73 | 31.91 |
PGSC0003DMT400088008 | Potato | nucleus | 24.9 | 31.61 |
PGSC0003DMT400061726 | Potato | nucleus | 40.82 | 30.58 |
HORVU6Hr1G003730.1 | Barley | nucleus | 10.2 | 29.41 |
PGSC0003DMT400097522 | Potato | cytosol, extracellular, mitochondrion, nucleus | 13.88 | 29.06 |
Bra024521.1-P | Field mustard | mitochondrion | 19.18 | 29.01 |
CDY04801 | Canola | mitochondrion, nucleus | 19.18 | 29.01 |
CDY21372 | Canola | mitochondrion | 19.18 | 29.01 |
AT1G22590.2 | Thale cress | mitochondrion, nucleus | 18.78 | 28.22 |
TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 17.96 | 28.21 |
GSMUA_Achr3P05500_001 | Banana | nucleus | 25.31 | 28.05 |
PGSC0003DMT400085114 | Potato | cytosol, endoplasmic reticulum, nucleus | 31.43 | 27.3 |
Bra012335.1-P | Field mustard | mitochondrion | 17.96 | 27.16 |
CDY25744 | Canola | mitochondrion | 17.96 | 27.16 |
GSMUA_Achr3P24560_001 | Banana | nucleus | 25.71 | 27.16 |
TraesCS3D01G138400.1 | Wheat | cytosol | 20.0 | 25.79 |
GSMUA_Achr3P08500_001 | Banana | nucleus | 24.08 | 25.65 |
PGSC0003DMT400086919 | Potato | nucleus | 25.71 | 25.61 |
TraesCS7B01G484600.1 | Wheat | nucleus | 17.14 | 25.61 |
PGSC0003DMT400090516 | Potato | nucleus | 18.37 | 25.42 |
TraesCS3B01G155200.1 | Wheat | cytosol | 20.0 | 25.13 |
TraesCS3A01G137500.1 | Wheat | cytosol | 19.59 | 24.12 |
GSMUA_AchrUn_... | Banana | nucleus | 22.86 | 24.03 |
HORVU7Hr1G121600.1 | Barley | nucleus | 17.96 | 23.78 |
PGSC0003DMT400095426 | Potato | mitochondrion | 33.88 | 23.78 |
GSMUA_Achr2P18400_001 | Banana | nucleus | 22.45 | 23.71 |
Os03t0582400-01 | Rice | nucleus | 24.08 | 23.69 |
PGSC0003DMT400086447 | Potato | cytosol | 18.37 | 23.44 |
GSMUA_Achr8P06150_001 | Banana | nucleus | 23.27 | 23.27 |
TraesCS2B01G171700.1 | Wheat | mitochondrion | 17.96 | 23.04 |
TraesCS7A01G559500.1 | Wheat | nucleus | 17.96 | 23.04 |
TraesCS7D01G548500.1 | Wheat | plastid | 22.04 | 22.98 |
TraesCS6B01G391600.1 | Wheat | nucleus | 22.86 | 22.86 |
TraesCS6B01G391700.1 | Wheat | nucleus | 22.86 | 22.86 |
TraesCS6D01G024000.1 | Wheat | mitochondrion, nucleus | 17.14 | 22.83 |
TraesCS7A01G561000.1 | Wheat | nucleus | 21.63 | 22.65 |
PGSC0003DMT400091747 | Potato | plastid | 13.88 | 22.37 |
TraesCS7B01G485400.1 | Wheat | nucleus | 21.22 | 22.22 |
KXG28892 | Sorghum | nucleus | 16.73 | 22.16 |
TraesCS7D01G550500.1 | Wheat | nucleus | 16.73 | 22.16 |
TraesCS6D01G023800.1 | Wheat | mitochondrion | 20.41 | 22.03 |
EES06917 | Sorghum | mitochondrion, nucleus | 23.27 | 22.01 |
TraesCS6D01G341700.1 | Wheat | nucleus | 21.63 | 21.99 |
TraesCS6B01G028100.1 | Wheat | mitochondrion | 16.73 | 21.81 |
TraesCS7B01G484000.1 | Wheat | nucleus | 16.33 | 21.62 |
Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 24.49 | 21.58 |
TraesCS6D01G342000.1 | Wheat | nucleus | 21.22 | 21.58 |
HORVU6Hr1G085570.1 | Barley | mitochondrion, nucleus | 22.86 | 21.54 |
PGSC0003DMT400085623 | Potato | nucleus | 17.55 | 21.5 |
TraesCS6A01G358900.1 | Wheat | nucleus | 20.41 | 21.19 |
TraesCS6B01G027900.1 | Wheat | nucleus | 19.59 | 21.15 |
OQU83806 | Sorghum | nucleus | 15.1 | 21.14 |
TraesCS3A01G312600.1 | Wheat | nucleus | 21.63 | 21.12 |
TraesCS6A01G359100.1 | Wheat | mitochondrion | 22.45 | 21.07 |
TraesCS6D01G342100.1 | Wheat | mitochondrion | 22.45 | 21.07 |
HORVU6Hr1G085540.1 | Barley | mitochondrion | 19.59 | 20.96 |
Zm00001d016791_P001 | Maize | mitochondrion | 24.49 | 20.91 |
EES10067 | Sorghum | mitochondrion | 17.55 | 20.87 |
TraesCS6B01G391800.1 | Wheat | mitochondrion | 22.04 | 20.69 |
KXG38099 | Sorghum | plastid | 26.12 | 20.32 |
KXG28893 | Sorghum | nucleus | 13.88 | 20.24 |
TraesCS3B01G159600.1 | Wheat | nucleus | 20.41 | 19.92 |
TraesCS6A01G020900.1 | Wheat | mitochondrion | 17.14 | 19.91 |
TraesCS6A01G022700.1 | Wheat | mitochondrion | 18.37 | 19.82 |
TraesCS6D01G024300.1 | Wheat | mitochondrion | 18.37 | 19.82 |
TraesCS7D01G550600.1 | Wheat | nucleus | 19.18 | 19.5 |
TraesCS7D01G551000.1 | Wheat | nucleus | 18.78 | 19.49 |
TraesCS6B01G028300.1 | Wheat | mitochondrion | 16.73 | 19.43 |
KXG32310 | Sorghum | nucleus | 19.18 | 19.42 |
HORVU2Hr1G022060.1 | Barley | nucleus, plastid | 15.92 | 19.02 |
TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 19.18 | 18.95 |
TraesCS6A01G359700.1 | Wheat | nucleus | 17.55 | 18.94 |
TraesCS7B01G484100.1 | Wheat | mitochondrion, nucleus | 18.37 | 18.67 |
EER91288 | Sorghum | mitochondrion, nucleus | 23.67 | 18.47 |
KXG28889 | Sorghum | nucleus | 18.78 | 18.4 |
TraesCS7B01G484500.1 | Wheat | nucleus | 17.96 | 18.26 |
KXG28890 | Sorghum | mitochondrion | 18.78 | 18.04 |
TraesCS7A01G551000.1 | Wheat | nucleus | 22.86 | 17.89 |
Zm00001d048894_P001 | Maize | mitochondrion | 17.96 | 17.81 |
PGSC0003DMT400065010 | Potato | vacuole | 14.29 | 17.5 |
TraesCS2D01G128000.1 | Wheat | nucleus | 15.1 | 17.45 |
PGSC0003DMT400085093 | Potato | extracellular, plastid, vacuole | 14.29 | 17.41 |
KXG28888 | Sorghum | nucleus | 17.96 | 17.25 |
TraesCS7D01G536700.1 | Wheat | nucleus | 22.04 | 17.25 |
OQU83804 | Sorghum | mitochondrion | 16.33 | 17.02 |
TraesCS6D01G342700.1 | Wheat | nucleus | 20.41 | 16.18 |
PGSC0003DMT400089615 | Potato | cytosol | 15.1 | 15.55 |
TraesCS6B01G392600.1 | Wheat | nucleus | 18.78 | 14.84 |
PGSC0003DMT400094113 | Potato | cytosol | 10.2 | 14.45 |
PGSC0003DMT400094378 | Potato | nucleus | 8.57 | 13.46 |
HORVU6Hr1G085670.1 | Barley | nucleus | 17.96 | 13.25 |
TraesCS2D01G150900.1 | Wheat | mitochondrion | 15.92 | 12.7 |
TraesCS7B01G299400.1 | Wheat | nucleus | 16.73 | 12.69 |
TraesCS7A01G398800.1 | Wheat | nucleus | 15.92 | 12.11 |
TraesCS7D01G393000.1 | Wheat | nucleus | 15.92 | 12.07 |
PGSC0003DMT400061722 | Potato | plastid | 4.9 | 11.54 |
TraesCS2A01G146400.1 | Wheat | mitochondrion | 16.33 | 11.24 |
TraesCS2B01G146100.1 | Wheat | nucleus | 14.69 | 9.92 |
Protein Annotations
EntrezGene:107058250 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 |
GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M1DI71 | InterPro:MADS_SRF-like | PFAM:PF00319 |
EnsemblPlantsGene:PGSC0003DMG400039025 | PGSC:PGSC0003DMG400039025 | EnsemblPlants:PGSC0003DMT400089454 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
PANTHER:PTHR11945:SF355 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000295BAFF |
RefSeq:XP_015159212.1 | : | : | : | : | : |
Description
Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400039025]
Coordinates
chr3:-:5616516..5617253
Molecular Weight (calculated)
28315.7 Da
IEP (calculated)
5.805
GRAVY (calculated)
-0.637
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRKKVKLAF IENSTARKVS YRKRQKGFLT KARELSTLCN VEIAAVIYSP YHNEPMIFPN NDVVTNTFTR FRELSELEKS KNMVTQENFT KQRIQKMEEQ
101: LGKVRKENRV RDFTNKMYEM LNGEDIPNGI HVYDLNDLSY VINQNLKQVS EAIKTKVNGE GLILSTPVLP QMNPSMNIPI TDASVPINNQ QSYFVSVQQS
201: PALSEMFDWS DDLMNLDWSD LMTLLDEPSF NNTNVQDPNH NNDNL
101: LGKVRKENRV RDFTNKMYEM LNGEDIPNGI HVYDLNDLSY VINQNLKQVS EAIKTKVNGE GLILSTPVLP QMNPSMNIPI TDASVPINNQ QSYFVSVQQS
201: PALSEMFDWS DDLMNLDWSD LMTLLDEPSF NNTNVQDPNH NNDNL
001: MTRKKVKLAY ISNDSSRKAT FKKRKKGLMK KVHELSTLCG ITACAIIYSP YDTNPEVWPS NSGVQRVVSE FRTLPEMDQH KKMVDQEGFL KQRIAKATET
101: LRRQRKDSRE LEMTEVMFQC LIGNMEMFHL NIVDLNDLGY MIEQYLKDVN RRIEILRNSG TEIGESSSVA VAASEGNIPM PNLVATTAPT TTIYEVGSSS
201: SFAAVANFVN PIDLQQFRHP AAQHVGLNEQ PQNLNLNLNQ NYNQNQEWFM EMMNHPEQMR YQTEQMGYQF MDDNHHNHIH HQPQEHQHQI HDESSNALDA
301: ANSSSIIPVT SSSITNKTWF H
101: LRRQRKDSRE LEMTEVMFQC LIGNMEMFHL NIVDLNDLGY MIEQYLKDVN RRIEILRNSG TEIGESSSVA VAASEGNIPM PNLVATTAPT TTIYEVGSSS
201: SFAAVANFVN PIDLQQFRHP AAQHVGLNEQ PQNLNLNLNQ NYNQNQEWFM EMMNHPEQMR YQTEQMGYQF MDDNHHNHIH HQPQEHQHQI HDESSNALDA
301: ANSSSIIPVT SSSITNKTWF H
Arabidopsis Description
AGL80Agamous-like MADS-box protein AGL80 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJK3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.