Skip to main content
crop-pal logo
Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400086956 Potato nucleus 37.96 63.27
PGSC0003DMT400089787 Potato cytosol 37.55 52.87
PGSC0003DMT400003073 Potato cytosol 22.04 50.0
PGSC0003DMT400088489 Potato nucleus 39.18 45.07
GSMUA_Achr2P18410_001 Banana nucleus 7.35 43.9
PGSC0003DMT400090586 Potato nucleus 41.22 42.98
PGSC0003DMT400087890 Potato cytosol 17.55 38.39
PGSC0003DMT400088654 Potato nucleus 50.61 37.92
PGSC0003DMT400073719 Potato nucleus 39.18 36.78
PGSC0003DMT400095755 Potato nucleus 50.61 36.05
PGSC0003DMT400090953 Potato nucleus 49.39 36.01
PGSC0003DMT400091650 Potato nucleus 37.14 35.14
PGSC0003DMT400077258 Potato nucleus 55.92 35.13
PGSC0003DMT400061724 Potato mitochondrion, nucleus 54.29 34.73
PGSC0003DMT400095417 Potato cytosol 17.14 32.81
PGSC0003DMT400085256 Potato nucleus 49.8 32.28
PGSC0003DMT400095062 Potato nucleus 36.73 31.91
PGSC0003DMT400088008 Potato nucleus 24.9 31.61
PGSC0003DMT400061726 Potato nucleus 40.82 30.58
HORVU6Hr1G003730.1 Barley nucleus 10.2 29.41
PGSC0003DMT400097522 Potato cytosol, extracellular, mitochondrion, nucleus 13.88 29.06
Bra024521.1-P Field mustard mitochondrion 19.18 29.01
CDY04801 Canola mitochondrion, nucleus 19.18 29.01
CDY21372 Canola mitochondrion 19.18 29.01
AT1G22590.2 Thale cress mitochondrion, nucleus 18.78 28.22
TraesCS6A01G020500.1 Wheat mitochondrion, nucleus 17.96 28.21
GSMUA_Achr3P05500_001 Banana nucleus 25.31 28.05
PGSC0003DMT400085114 Potato cytosol, endoplasmic reticulum, nucleus 31.43 27.3
Bra012335.1-P Field mustard mitochondrion 17.96 27.16
CDY25744 Canola mitochondrion 17.96 27.16
GSMUA_Achr3P24560_001 Banana nucleus 25.71 27.16
TraesCS3D01G138400.1 Wheat cytosol 20.0 25.79
GSMUA_Achr3P08500_001 Banana nucleus 24.08 25.65
PGSC0003DMT400086919 Potato nucleus 25.71 25.61
TraesCS7B01G484600.1 Wheat nucleus 17.14 25.61
PGSC0003DMT400090516 Potato nucleus 18.37 25.42
TraesCS3B01G155200.1 Wheat cytosol 20.0 25.13
TraesCS3A01G137500.1 Wheat cytosol 19.59 24.12
GSMUA_AchrUn_... Banana nucleus 22.86 24.03
HORVU7Hr1G121600.1 Barley nucleus 17.96 23.78
PGSC0003DMT400095426 Potato mitochondrion 33.88 23.78
GSMUA_Achr2P18400_001 Banana nucleus 22.45 23.71
Os03t0582400-01 Rice nucleus 24.08 23.69
PGSC0003DMT400086447 Potato cytosol 18.37 23.44
GSMUA_Achr8P06150_001 Banana nucleus 23.27 23.27
TraesCS2B01G171700.1 Wheat mitochondrion 17.96 23.04
TraesCS7A01G559500.1 Wheat nucleus 17.96 23.04
TraesCS7D01G548500.1 Wheat plastid 22.04 22.98
TraesCS6B01G391600.1 Wheat nucleus 22.86 22.86
TraesCS6B01G391700.1 Wheat nucleus 22.86 22.86
TraesCS6D01G024000.1 Wheat mitochondrion, nucleus 17.14 22.83
TraesCS7A01G561000.1 Wheat nucleus 21.63 22.65
PGSC0003DMT400091747 Potato plastid 13.88 22.37
TraesCS7B01G485400.1 Wheat nucleus 21.22 22.22
KXG28892 Sorghum nucleus 16.73 22.16
TraesCS7D01G550500.1 Wheat nucleus 16.73 22.16
TraesCS6D01G023800.1 Wheat mitochondrion 20.41 22.03
EES06917 Sorghum mitochondrion, nucleus 23.27 22.01
TraesCS6D01G341700.1 Wheat nucleus 21.63 21.99
TraesCS6B01G028100.1 Wheat mitochondrion 16.73 21.81
TraesCS7B01G484000.1 Wheat nucleus 16.33 21.62
Zm00001d013792_P001 Maize mitochondrion, nucleus 24.49 21.58
TraesCS6D01G342000.1 Wheat nucleus 21.22 21.58
HORVU6Hr1G085570.1 Barley mitochondrion, nucleus 22.86 21.54
PGSC0003DMT400085623 Potato nucleus 17.55 21.5
TraesCS6A01G358900.1 Wheat nucleus 20.41 21.19
TraesCS6B01G027900.1 Wheat nucleus 19.59 21.15
OQU83806 Sorghum nucleus 15.1 21.14
TraesCS3A01G312600.1 Wheat nucleus 21.63 21.12
TraesCS6A01G359100.1 Wheat mitochondrion 22.45 21.07
TraesCS6D01G342100.1 Wheat mitochondrion 22.45 21.07
HORVU6Hr1G085540.1 Barley mitochondrion 19.59 20.96
Zm00001d016791_P001 Maize mitochondrion 24.49 20.91
EES10067 Sorghum mitochondrion 17.55 20.87
TraesCS6B01G391800.1 Wheat mitochondrion 22.04 20.69
KXG38099 Sorghum plastid 26.12 20.32
KXG28893 Sorghum nucleus 13.88 20.24
TraesCS3B01G159600.1 Wheat nucleus 20.41 19.92
TraesCS6A01G020900.1 Wheat mitochondrion 17.14 19.91
TraesCS6A01G022700.1 Wheat mitochondrion 18.37 19.82
TraesCS6D01G024300.1 Wheat mitochondrion 18.37 19.82
TraesCS7D01G550600.1 Wheat nucleus 19.18 19.5
TraesCS7D01G551000.1 Wheat nucleus 18.78 19.49
TraesCS6B01G028300.1 Wheat mitochondrion 16.73 19.43
KXG32310 Sorghum nucleus 19.18 19.42
HORVU2Hr1G022060.1 Barley nucleus, plastid 15.92 19.02
TraesCS6D01G341800.1 Wheat mitochondrion, nucleus 19.18 18.95
TraesCS6A01G359700.1 Wheat nucleus 17.55 18.94
TraesCS7B01G484100.1 Wheat mitochondrion, nucleus 18.37 18.67
EER91288 Sorghum mitochondrion, nucleus 23.67 18.47
KXG28889 Sorghum nucleus 18.78 18.4
TraesCS7B01G484500.1 Wheat nucleus 17.96 18.26
KXG28890 Sorghum mitochondrion 18.78 18.04
TraesCS7A01G551000.1 Wheat nucleus 22.86 17.89
Zm00001d048894_P001 Maize mitochondrion 17.96 17.81
PGSC0003DMT400065010 Potato vacuole 14.29 17.5
TraesCS2D01G128000.1 Wheat nucleus 15.1 17.45
PGSC0003DMT400085093 Potato extracellular, plastid, vacuole 14.29 17.41
KXG28888 Sorghum nucleus 17.96 17.25
TraesCS7D01G536700.1 Wheat nucleus 22.04 17.25
OQU83804 Sorghum mitochondrion 16.33 17.02
TraesCS6D01G342700.1 Wheat nucleus 20.41 16.18
PGSC0003DMT400089615 Potato cytosol 15.1 15.55
TraesCS6B01G392600.1 Wheat nucleus 18.78 14.84
PGSC0003DMT400094113 Potato cytosol 10.2 14.45
PGSC0003DMT400094378 Potato nucleus 8.57 13.46
HORVU6Hr1G085670.1 Barley nucleus 17.96 13.25
TraesCS2D01G150900.1 Wheat mitochondrion 15.92 12.7
TraesCS7B01G299400.1 Wheat nucleus 16.73 12.69
TraesCS7A01G398800.1 Wheat nucleus 15.92 12.11
TraesCS7D01G393000.1 Wheat nucleus 15.92 12.07
PGSC0003DMT400061722 Potato plastid 4.9 11.54
TraesCS2A01G146400.1 Wheat mitochondrion 16.33 11.24
TraesCS2B01G146100.1 Wheat nucleus 14.69 9.92
Protein Annotations
EntrezGene:107058250MapMan:15.5.14Gene3D:3.40.1810.10ncoils:CoilGO:GO:0000982GO:GO:0000987
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0045944
GO:GO:0046983InterPro:IPR002100InterPro:IPR036879UniProt:M1DI71InterPro:MADS_SRF-likePFAM:PF00319
EnsemblPlantsGene:PGSC0003DMG400039025PGSC:PGSC0003DMG400039025EnsemblPlants:PGSC0003DMT400089454PRINTS:PR00404PFscan:PS50066PANTHER:PTHR11945
PANTHER:PTHR11945:SF355SMART:SM00432SUPFAM:SSF55455InterPro:TF_MADSboxInterPro:TF_MADSbox_sfUniParc:UPI000295BAFF
RefSeq:XP_015159212.1:::::
Description
Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400039025]
Coordinates
chr3:-:5616516..5617253
Molecular Weight (calculated)
28315.7 Da
IEP (calculated)
5.805
GRAVY (calculated)
-0.637
Length
245 amino acids
Sequence
(BLAST)
001: MPRKKVKLAF IENSTARKVS YRKRQKGFLT KARELSTLCN VEIAAVIYSP YHNEPMIFPN NDVVTNTFTR FRELSELEKS KNMVTQENFT KQRIQKMEEQ
101: LGKVRKENRV RDFTNKMYEM LNGEDIPNGI HVYDLNDLSY VINQNLKQVS EAIKTKVNGE GLILSTPVLP QMNPSMNIPI TDASVPINNQ QSYFVSVQQS
201: PALSEMFDWS DDLMNLDWSD LMTLLDEPSF NNTNVQDPNH NNDNL
Best Arabidopsis Sequence Match ( AT5G48670.1 )
(BLAST)
001: MTRKKVKLAY ISNDSSRKAT FKKRKKGLMK KVHELSTLCG ITACAIIYSP YDTNPEVWPS NSGVQRVVSE FRTLPEMDQH KKMVDQEGFL KQRIAKATET
101: LRRQRKDSRE LEMTEVMFQC LIGNMEMFHL NIVDLNDLGY MIEQYLKDVN RRIEILRNSG TEIGESSSVA VAASEGNIPM PNLVATTAPT TTIYEVGSSS
201: SFAAVANFVN PIDLQQFRHP AAQHVGLNEQ PQNLNLNLNQ NYNQNQEWFM EMMNHPEQMR YQTEQMGYQF MDDNHHNHIH HQPQEHQHQI HDESSNALDA
301: ANSSSIIPVT SSSITNKTWF H
Arabidopsis Description
AGL80Agamous-like MADS-box protein AGL80 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJK3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.