Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400089787 | Potato | cytosol | 51.06 | 82.76 |
| PGSC0003DMT400094113 | Potato | cytosol | 47.52 | 77.46 |
| PGSC0003DMT400094378 | Potato | nucleus | 41.13 | 74.36 |
| PGSC0003DMT400085623 | Potato | nucleus | 52.13 | 73.5 |
| PGSC0003DMT400090516 | Potato | nucleus | 45.39 | 72.32 |
| PGSC0003DMT400088654 | Potato | nucleus | 81.56 | 70.34 |
| PGSC0003DMT400090953 | Potato | nucleus | 77.66 | 65.18 |
| PGSC0003DMT400086919 | Potato | nucleus | 54.96 | 63.01 |
| PGSC0003DMT400095755 | Potato | nucleus | 76.24 | 62.5 |
| PGSC0003DMT400088489 | Potato | nucleus | 44.33 | 58.69 |
| PGSC0003DMT400095426 | Potato | mitochondrion | 68.44 | 55.3 |
| PGSC0003DMT400091650 | Potato | nucleus | 48.94 | 53.28 |
| PGSC0003DMT400003073 | Potato | cytosol | 20.21 | 52.78 |
| PGSC0003DMT400086956 | Potato | nucleus | 25.18 | 48.3 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 5.67 | 39.02 |
| PGSC0003DMT400087890 | Potato | cytosol | 14.89 | 37.5 |
| PGSC0003DMT400077258 | Potato | nucleus | 51.77 | 37.44 |
| PGSC0003DMT400073719 | Potato | nucleus | 34.04 | 36.78 |
| PGSC0003DMT400089454 | Potato | nucleus | 31.91 | 36.73 |
| PGSC0003DMT400088008 | Potato | nucleus | 24.47 | 35.75 |
| PGSC0003DMT400090586 | Potato | nucleus | 29.08 | 34.89 |
| PGSC0003DMT400085256 | Potato | nucleus | 43.97 | 32.8 |
| HORVU6Hr1G003730.1 | Barley | nucleus | 9.57 | 31.76 |
| PGSC0003DMT400061726 | Potato | nucleus | 36.52 | 31.5 |
| PGSC0003DMT400095417 | Potato | cytosol | 14.18 | 31.25 |
| PGSC0003DMT400061724 | Potato | mitochondrion, nucleus | 39.36 | 28.98 |
| TraesCS7B01G484600.1 | Wheat | nucleus | 16.31 | 28.05 |
| AT1G22590.2 | Thale cress | mitochondrion, nucleus | 15.96 | 27.61 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 21.63 | 26.29 |
| HORVU6Hr1G085540.1 | Barley | mitochondrion | 21.28 | 26.2 |
| TraesCS7A01G559500.1 | Wheat | nucleus | 17.73 | 26.18 |
| TraesCS7D01G550500.1 | Wheat | nucleus | 17.02 | 25.95 |
| Bra024521.1-P | Field mustard | mitochondrion | 14.89 | 25.93 |
| CDY04801 | Canola | mitochondrion, nucleus | 14.89 | 25.93 |
| CDY21372 | Canola | mitochondrion | 14.89 | 25.93 |
| TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 14.18 | 25.64 |
| TraesCS7B01G484000.1 | Wheat | nucleus | 16.67 | 25.41 |
| TraesCS6D01G341700.1 | Wheat | nucleus | 21.63 | 25.31 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 20.92 | 25.0 |
| TraesCS6D01G342000.1 | Wheat | nucleus | 21.28 | 24.9 |
| HORVU7Hr1G121600.1 | Barley | nucleus | 16.31 | 24.86 |
| Bra012335.1-P | Field mustard | mitochondrion | 14.18 | 24.69 |
| CDY25744 | Canola | mitochondrion | 14.18 | 24.69 |
| TraesCS6B01G391700.1 | Wheat | nucleus | 21.28 | 24.49 |
| PGSC0003DMT400086447 | Potato | cytosol | 16.67 | 24.48 |
| GSMUA_Achr3P05500_001 | Banana | nucleus | 19.15 | 24.43 |
| TraesCS6B01G391600.1 | Wheat | nucleus | 20.92 | 24.08 |
| TraesCS7D01G550600.1 | Wheat | nucleus | 20.57 | 24.07 |
| TraesCS7D01G551000.1 | Wheat | nucleus | 19.86 | 23.73 |
| TraesCS7B01G484100.1 | Wheat | mitochondrion, nucleus | 20.21 | 23.65 |
| TraesCS2B01G171700.1 | Wheat | mitochondrion | 15.96 | 23.56 |
| PGSC0003DMT400089615 | Potato | cytosol | 19.5 | 23.11 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 18.79 | 23.04 |
| TraesCS7B01G484500.1 | Wheat | nucleus | 19.5 | 22.82 |
| TraesCS6D01G024000.1 | Wheat | mitochondrion, nucleus | 14.54 | 22.28 |
| Os03t0582400-01 | Rice | nucleus | 19.5 | 22.09 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 17.73 | 21.55 |
| KXG32310 | Sorghum | nucleus | 18.44 | 21.49 |
| TraesCS6A01G359100.1 | Wheat | mitochondrion | 19.86 | 21.46 |
| TraesCS6D01G342100.1 | Wheat | mitochondrion | 19.86 | 21.46 |
| TraesCS6B01G028100.1 | Wheat | mitochondrion | 14.18 | 21.28 |
| TraesCS7D01G548500.1 | Wheat | plastid | 17.73 | 21.28 |
| HORVU6Hr1G085570.1 | Barley | mitochondrion, nucleus | 19.5 | 21.15 |
| TraesCS6B01G027900.1 | Wheat | nucleus | 17.02 | 21.15 |
| TraesCS6D01G023800.1 | Wheat | mitochondrion | 17.02 | 21.15 |
| TraesCS7A01G561000.1 | Wheat | nucleus | 17.38 | 20.94 |
| TraesCS7B01G485400.1 | Wheat | nucleus | 17.38 | 20.94 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 18.09 | 20.82 |
| TraesCS2D01G128000.1 | Wheat | nucleus | 15.6 | 20.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.02 | 20.6 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 18.09 | 20.56 |
| KXG28892 | Sorghum | nucleus | 13.48 | 20.54 |
| TraesCS3B01G155200.1 | Wheat | cytosol | 14.18 | 20.51 |
| HORVU2Hr1G022060.1 | Barley | nucleus, plastid | 14.89 | 20.49 |
| EES06917 | Sorghum | mitochondrion, nucleus | 18.79 | 20.46 |
| TraesCS6A01G020900.1 | Wheat | mitochondrion | 15.25 | 20.38 |
| TraesCS6A01G022700.1 | Wheat | mitochondrion | 16.31 | 20.26 |
| TraesCS6D01G024300.1 | Wheat | mitochondrion | 16.31 | 20.26 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 19.86 | 20.14 |
| OQU83806 | Sorghum | nucleus | 12.41 | 20.0 |
| TraesCS6B01G391800.1 | Wheat | mitochondrion | 18.44 | 19.92 |
| TraesCS3A01G312600.1 | Wheat | nucleus | 17.73 | 19.92 |
| TraesCS3B01G159600.1 | Wheat | nucleus | 17.73 | 19.92 |
| TraesCS3A01G137500.1 | Wheat | cytosol | 13.83 | 19.6 |
| TraesCS3D01G138400.1 | Wheat | cytosol | 13.12 | 19.47 |
| TraesCS6B01G028300.1 | Wheat | mitochondrion | 14.54 | 19.43 |
| EES10067 | Sorghum | mitochondrion | 14.18 | 19.42 |
| PGSC0003DMT400085114 | Potato | cytosol, endoplasmic reticulum, nucleus | 18.79 | 18.79 |
| KXG28890 | Sorghum | mitochondrion | 16.67 | 18.43 |
| PGSC0003DMT400061722 | Potato | plastid | 6.74 | 18.27 |
| TraesCS7A01G551000.1 | Wheat | nucleus | 20.21 | 18.21 |
| Zm00001d016791_P001 | Maize | mitochondrion | 18.44 | 18.12 |
| TraesCS6A01G359700.1 | Wheat | nucleus | 14.54 | 18.06 |
| KXG28893 | Sorghum | nucleus | 10.64 | 17.86 |
| KXG28888 | Sorghum | nucleus | 15.96 | 17.65 |
| KXG38099 | Sorghum | plastid | 19.5 | 17.46 |
| OQU83804 | Sorghum | mitochondrion | 14.54 | 17.45 |
| TraesCS7D01G536700.1 | Wheat | nucleus | 18.79 | 16.93 |
| EER91288 | Sorghum | mitochondrion, nucleus | 18.79 | 16.88 |
| KXG28889 | Sorghum | nucleus | 14.54 | 16.4 |
| TraesCS2D01G150900.1 | Wheat | mitochondrion | 17.73 | 16.29 |
| Zm00001d048894_P001 | Maize | mitochondrion | 14.18 | 16.19 |
| PGSC0003DMT400097522 | Potato | cytosol, extracellular, mitochondrion, nucleus | 6.38 | 15.38 |
| TraesCS6D01G342700.1 | Wheat | nucleus | 15.96 | 14.56 |
| TraesCS6B01G392600.1 | Wheat | nucleus | 15.96 | 14.52 |
| TraesCS2A01G146400.1 | Wheat | mitochondrion | 17.73 | 14.04 |
| PGSC0003DMT400085093 | Potato | extracellular, plastid, vacuole | 9.93 | 13.93 |
| TraesCS2B01G146100.1 | Wheat | nucleus | 17.73 | 13.77 |
| TraesCS7B01G299400.1 | Wheat | nucleus | 15.25 | 13.31 |
| PGSC0003DMT400091747 | Potato | plastid | 7.09 | 13.16 |
| TraesCS7D01G393000.1 | Wheat | nucleus | 14.89 | 13.0 |
| TraesCS7A01G398800.1 | Wheat | nucleus | 14.54 | 12.73 |
| PGSC0003DMT400065010 | Potato | vacuole | 8.87 | 12.5 |
| HORVU6Hr1G085670.1 | Barley | nucleus | 14.18 | 12.05 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M1DVH9 | InterPro:MADS_SRF-like | PFAM:PF00319 | EnsemblPlantsGene:PGSC0003DMG400044633 |
| PGSC:PGSC0003DMG400044633 | EnsemblPlants:PGSC0003DMT400095062 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF153 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000295337A | SEG:seg | : |
Description
Mads box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400044633]
Coordinates
chr5:+:41389552..41390400
Molecular Weight (calculated)
32557.9 Da
IEP (calculated)
9.564
GRAVY (calculated)
-0.521
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MTRNKVNYAF IEDDSKRKIS YYKRLKRLLK KSDELKTPCD VEVATLIYDP YRNEPCTFPN NDVVRNIFIK FKELPTLERS KNMVTRQEFT IKKIKKLEEQ
101: LQKVRKENRV KEIINEMYAV FERKTIFVDM DSSYLNDLCC VIKKNLKRVR KLMIKEDDGE GSTSNAPQPI VEPMVPTRNN SEGPRYPSPL LFSQMFPPMV
201: PQLFSPMPHH MAVGKTPGLT HPMPSTIRDS LIPSPTMDSL MPSPMIDSSM PSLIMDPRMY SPVSPTLTQQ MESSMDIPSI GI
101: LQKVRKENRV KEIINEMYAV FERKTIFVDM DSSYLNDLCC VIKKNLKRVR KLMIKEDDGE GSTSNAPQPI VEPMVPTRNN SEGPRYPSPL LFSQMFPPMV
201: PQLFSPMPHH MAVGKTPGLT HPMPSTIRDS LIPSPTMDSL MPSPMIDSSM PSLIMDPRMY SPVSPTLTQQ MESSMDIPSI GI
001: MKRKMKLSLI ENSVSRKTTF TKRKKGMTKK LTELVTLCGV EACAVVYSPF NSIPEAWPSR EGVEDVVSKF MELSVLDRTK KMVDQETFIS QRIAKEKEQL
101: QKLRDENHNS QIRELMFGCL KGETNVYNLD GRDLQDLSLY IDKYLNGLTR RIEILIENGE SSSSLPLPIV ANAAAPVGFD GPMFQYHNQN QQKPVQFQYQ
201: ALYDFYDQIP KKIHGFNMNM NKDSNQSMVL DLNQNLNDGE DEGIPCMDNN NYHPEIDCLA TVTTAPTDVC APNITNDL
101: QKLRDENHNS QIRELMFGCL KGETNVYNLD GRDLQDLSLY IDKYLNGLTR RIEILIENGE SSSSLPLPIV ANAAAPVGFD GPMFQYHNQN QQKPVQFQYQ
201: ALYDFYDQIP KKIHGFNMNM NKDSNQSMVL DLNQNLNDGE DEGIPCMDNN NYHPEIDCLA TVTTAPTDVC APNITNDL
Arabidopsis Description
PHE2MADS-box transcription factor PHERES 2 [Source:UniProtKB/Swiss-Prot;Acc:Q7XJK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.