Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400089615 | Potato | cytosol | 52.82 | 86.55 |
| PGSC0003DMT400089787 | Potato | cytosol | 27.44 | 61.49 |
| PGSC0003DMT400003073 | Potato | cytosol | 16.92 | 61.11 |
| PGSC0003DMT400085256 | Potato | nucleus | 58.46 | 60.32 |
| PGSC0003DMT400086956 | Potato | nucleus | 22.05 | 58.5 |
| PGSC0003DMT400089454 | Potato | nucleus | 35.13 | 55.92 |
| PGSC0003DMT400088489 | Potato | nucleus | 29.23 | 53.52 |
| PGSC0003DMT400088654 | Potato | nucleus | 44.87 | 53.52 |
| PGSC0003DMT400095062 | Potato | nucleus | 37.44 | 51.77 |
| PGSC0003DMT400090953 | Potato | nucleus | 43.08 | 50.0 |
| PGSC0003DMT400095755 | Potato | nucleus | 43.85 | 49.71 |
| PGSC0003DMT400097522 | Potato | cytosol, extracellular, mitochondrion, nucleus | 14.87 | 49.57 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 5.13 | 48.78 |
| PGSC0003DMT400061724 | Potato | mitochondrion, nucleus | 46.15 | 47.0 |
| PGSC0003DMT400090516 | Potato | nucleus | 21.28 | 46.89 |
| PGSC0003DMT400061726 | Potato | nucleus | 39.23 | 46.79 |
| PGSC0003DMT400090586 | Potato | nucleus | 27.69 | 45.96 |
| PGSC0003DMT400085623 | Potato | nucleus | 23.33 | 45.5 |
| PGSC0003DMT400086919 | Potato | nucleus | 28.46 | 45.12 |
| PGSC0003DMT400085114 | Potato | cytosol, endoplasmic reticulum, nucleus | 32.31 | 44.68 |
| PGSC0003DMT400065010 | Potato | vacuole | 22.82 | 44.5 |
| PGSC0003DMT400086447 | Potato | cytosol | 21.79 | 44.27 |
| PGSC0003DMT400073719 | Potato | nucleus | 28.72 | 42.91 |
| PGSC0003DMT400087890 | Potato | cytosol | 12.31 | 42.86 |
| PGSC0003DMT400091747 | Potato | plastid | 16.67 | 42.76 |
| PGSC0003DMT400094378 | Potato | nucleus | 16.92 | 42.31 |
| PGSC0003DMT400085093 | Potato | extracellular, plastid, vacuole | 21.54 | 41.79 |
| PGSC0003DMT400094113 | Potato | cytosol | 18.21 | 41.04 |
| PGSC0003DMT400091650 | Potato | nucleus | 27.18 | 40.93 |
| PGSC0003DMT400095417 | Potato | cytosol | 13.33 | 40.62 |
| PGSC0003DMT400088008 | Potato | nucleus | 20.0 | 40.41 |
| PGSC0003DMT400061722 | Potato | plastid | 10.51 | 39.42 |
| PGSC0003DMT400095426 | Potato | mitochondrion | 34.1 | 38.11 |
| HORVU6Hr1G003730.1 | Barley | nucleus | 6.67 | 30.59 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 17.18 | 28.88 |
| TraesCS7B01G484600.1 | Wheat | nucleus | 11.79 | 28.05 |
| GSMUA_Achr3P05500_001 | Banana | nucleus | 15.64 | 27.6 |
| TraesCS7A01G559500.1 | Wheat | nucleus | 13.33 | 27.23 |
| Bra012335.1-P | Field mustard | mitochondrion | 11.28 | 27.16 |
| CDY25744 | Canola | mitochondrion | 11.28 | 27.16 |
| TraesCS7D01G550500.1 | Wheat | nucleus | 12.82 | 27.03 |
| AT1G22590.2 | Thale cress | mitochondrion, nucleus | 11.28 | 26.99 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 16.92 | 26.94 |
| HORVU6Hr1G085540.1 | Barley | mitochondrion | 15.64 | 26.64 |
| Bra024521.1-P | Field mustard | mitochondrion | 11.03 | 26.54 |
| CDY04801 | Canola | mitochondrion, nucleus | 11.03 | 26.54 |
| CDY21372 | Canola | mitochondrion | 11.03 | 26.54 |
| TraesCS7B01G484000.1 | Wheat | nucleus | 12.31 | 25.95 |
| GSMUA_AchrUn_... | Banana | nucleus | 15.38 | 25.75 |
| TraesCS6D01G342000.1 | Wheat | nucleus | 15.9 | 25.73 |
| TraesCS6B01G391600.1 | Wheat | nucleus | 16.15 | 25.71 |
| HORVU7Hr1G121600.1 | Barley | nucleus | 12.05 | 25.41 |
| TraesCS6B01G391700.1 | Wheat | nucleus | 15.9 | 25.31 |
| OQU83806 | Sorghum | nucleus | 11.28 | 25.14 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 14.62 | 24.78 |
| TraesCS2B01G171700.1 | Wheat | mitochondrion | 12.05 | 24.61 |
| Os03t0582400-01 | Rice | nucleus | 15.64 | 24.5 |
| TraesCS6D01G341700.1 | Wheat | nucleus | 15.13 | 24.48 |
| KXG28892 | Sorghum | nucleus | 11.54 | 24.32 |
| TraesCS7D01G550600.1 | Wheat | nucleus | 14.87 | 24.07 |
| TraesCS7D01G551000.1 | Wheat | nucleus | 14.36 | 23.73 |
| TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 9.49 | 23.72 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 14.1 | 23.71 |
| TraesCS3B01G155200.1 | Wheat | cytosol | 11.79 | 23.59 |
| EES06917 | Sorghum | mitochondrion, nucleus | 15.64 | 23.55 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 16.67 | 23.38 |
| TraesCS6A01G358900.1 | Wheat | nucleus | 14.1 | 23.31 |
| HORVU6Hr1G085570.1 | Barley | mitochondrion, nucleus | 15.38 | 23.08 |
| TraesCS6A01G359100.1 | Wheat | mitochondrion | 15.38 | 22.99 |
| TraesCS6D01G342100.1 | Wheat | mitochondrion | 15.38 | 22.99 |
| TraesCS7D01G548500.1 | Wheat | plastid | 13.85 | 22.98 |
| TraesCS7B01G484100.1 | Wheat | mitochondrion, nucleus | 14.1 | 22.82 |
| TraesCS3D01G138400.1 | Wheat | cytosol | 11.03 | 22.63 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 14.36 | 22.58 |
| TraesCS7B01G484500.1 | Wheat | nucleus | 13.85 | 22.41 |
| KXG32310 | Sorghum | nucleus | 13.85 | 22.31 |
| TraesCS7A01G561000.1 | Wheat | nucleus | 13.33 | 22.22 |
| TraesCS7B01G485400.1 | Wheat | nucleus | 13.33 | 22.22 |
| TraesCS3A01G137500.1 | Wheat | cytosol | 11.28 | 22.11 |
| KXG28893 | Sorghum | nucleus | 9.49 | 22.02 |
| EES10067 | Sorghum | mitochondrion | 11.54 | 21.84 |
| TraesCS6D01G024000.1 | Wheat | mitochondrion, nucleus | 10.26 | 21.74 |
| Zm00001d016791_P001 | Maize | mitochondrion | 15.9 | 21.6 |
| KXG38099 | Sorghum | plastid | 17.44 | 21.59 |
| HORVU2Hr1G022060.1 | Barley | nucleus, plastid | 11.28 | 21.46 |
| TraesCS3B01G159600.1 | Wheat | nucleus | 13.59 | 21.12 |
| TraesCS6B01G391800.1 | Wheat | mitochondrion | 14.1 | 21.07 |
| Zm00001d048894_P001 | Maize | mitochondrion | 13.33 | 21.05 |
| KXG28889 | Sorghum | nucleus | 13.08 | 20.4 |
| TraesCS3A01G312600.1 | Wheat | nucleus | 13.08 | 20.32 |
| TraesCS6A01G022700.1 | Wheat | mitochondrion | 11.79 | 20.26 |
| TraesCS6B01G027900.1 | Wheat | nucleus | 11.79 | 20.26 |
| TraesCS6D01G023800.1 | Wheat | mitochondrion | 11.79 | 20.26 |
| TraesCS6D01G024300.1 | Wheat | mitochondrion | 11.79 | 20.26 |
| TraesCS6B01G028100.1 | Wheat | mitochondrion | 9.74 | 20.21 |
| KXG28890 | Sorghum | mitochondrion | 13.08 | 20.0 |
| TraesCS6A01G020900.1 | Wheat | mitochondrion | 10.77 | 19.91 |
| TraesCS7A01G551000.1 | Wheat | nucleus | 15.9 | 19.81 |
| EER91288 | Sorghum | mitochondrion, nucleus | 15.9 | 19.75 |
| KXG28888 | Sorghum | nucleus | 12.56 | 19.22 |
| TraesCS6B01G028300.1 | Wheat | mitochondrion | 10.26 | 18.96 |
| TraesCS6A01G359700.1 | Wheat | nucleus | 11.03 | 18.94 |
| OQU83804 | Sorghum | mitochondrion | 11.28 | 18.72 |
| TraesCS2D01G128000.1 | Wheat | nucleus | 10.0 | 18.4 |
| TraesCS7D01G536700.1 | Wheat | nucleus | 14.62 | 18.21 |
| TraesCS6D01G342700.1 | Wheat | nucleus | 12.82 | 16.18 |
| TraesCS6B01G392600.1 | Wheat | nucleus | 12.31 | 15.48 |
| HORVU6Hr1G085670.1 | Barley | nucleus | 13.08 | 15.36 |
| TraesCS2D01G150900.1 | Wheat | mitochondrion | 12.05 | 15.31 |
| TraesCS7B01G299400.1 | Wheat | nucleus | 12.56 | 15.17 |
| TraesCS7D01G393000.1 | Wheat | nucleus | 12.31 | 14.86 |
| TraesCS2B01G146100.1 | Wheat | nucleus | 13.33 | 14.33 |
| TraesCS7A01G398800.1 | Wheat | nucleus | 11.54 | 13.98 |
| TraesCS2A01G146400.1 | Wheat | mitochondrion | 12.31 | 13.48 |
Protein Annotations
| EntrezGene:102580242 | MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 |
| GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | UniProt:M1CY43 | InterPro:MADS_SRF-like | PFAM:PF00319 |
| EnsemblPlantsGene:PGSC0003DMG400030053 | PGSC:PGSC0003DMG400030053 | EnsemblPlants:PGSC0003DMT400077258 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF153 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI000295FE5F |
| RefSeq:XP_006341870.1 | SEG:seg | : | : | : | : |
Description
Type I MADS box transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400030053]
Coordinates
chr4:-:20856443..20857615
Molecular Weight (calculated)
43485.6 Da
IEP (calculated)
6.943
GRAVY (calculated)
-0.411
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRNKVKLAL IENESDRKVS YKKREKGFLK KAHELSTLCD VEIAAVIDSP YNNEPTVFPN YDAAINTFVK FKELPTLEKS KNMVTREEFT KKRIEKMEEK
101: LLKVRKQNRL KEITNEMYEV TRGKDISPNM DPYDFNDLSY MIKKNLIQIR EAMNGEEVCT SNVPQPIVEP IIIGGTNSEG SKATLLATAG SLLPMIPLES
201: PSMVPGGTNF EKTRPPLFVP NVAPPTVPLS ASPKVTQQMV HLADPSRTPI QMVPLMDTSQ VNPSPIFSSQ IFPPMVPYLF STIPQQMAIR RTPGMAFSMP
301: SATMSSLMPS PMIAPPVCSP LTSQMDPSTD LPPMGASMLI NNHQNYTANR PQSPSLSELL NWNNDDVVTL LEDPSLHNIN VQDPNRSNNT
101: LLKVRKQNRL KEITNEMYEV TRGKDISPNM DPYDFNDLSY MIKKNLIQIR EAMNGEEVCT SNVPQPIVEP IIIGGTNSEG SKATLLATAG SLLPMIPLES
201: PSMVPGGTNF EKTRPPLFVP NVAPPTVPLS ASPKVTQQMV HLADPSRTPI QMVPLMDTSQ VNPSPIFSSQ IFPPMVPYLF STIPQQMAIR RTPGMAFSMP
301: SATMSSLMPS PMIAPPVCSP LTSQMDPSTD LPPMGASMLI NNHQNYTANR PQSPSLSELL NWNNDDVVTL LEDPSLHNIN VQDPNRSNNT
001: MTRKKVKLAY ISNDSSRKAT FKKRKKGLMK KVHELSTLCG ITACAIIYSP YDTNPEVWPS NSGVQRVVSE FRTLPEMDQH KKMVDQEGFL KQRIAKATET
101: LRRQRKDSRE LEMTEVMFQC LIGNMEMFHL NIVDLNDLGY MIEQYLKDVN RRIEILRNSG TEIGESSSVA VAASEGNIPM PNLVATTAPT TTIYEVGSSS
201: SFAAVANFVN PIDLQQFRHP AAQHVGLNEQ PQNLNLNLNQ NYNQNQEWFM EMMNHPEQMR YQTEQMGYQF MDDNHHNHIH HQPQEHQHQI HDESSNALDA
301: ANSSSIIPVT SSSITNKTWF H
101: LRRQRKDSRE LEMTEVMFQC LIGNMEMFHL NIVDLNDLGY MIEQYLKDVN RRIEILRNSG TEIGESSSVA VAASEGNIPM PNLVATTAPT TTIYEVGSSS
201: SFAAVANFVN PIDLQQFRHP AAQHVGLNEQ PQNLNLNLNQ NYNQNQEWFM EMMNHPEQMR YQTEQMGYQF MDDNHHNHIH HQPQEHQHQI HDESSNALDA
301: ANSSSIIPVT SSSITNKTWF H
Arabidopsis Description
AGL80Agamous-like MADS-box protein AGL80 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJK3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.