Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G341700.1 | Wheat | nucleus | 89.83 | 87.97 |
| TraesCS6D01G342000.1 | Wheat | nucleus | 86.44 | 84.65 |
| TraesCS6B01G391700.1 | Wheat | nucleus | 80.51 | 77.55 |
| TraesCS6B01G391600.1 | Wheat | nucleus | 80.08 | 77.14 |
| HORVU6Hr1G085540.1 | Barley | mitochondrion | 72.46 | 74.67 |
| TraesCS6D01G341800.1 | Wheat | mitochondrion, nucleus | 72.03 | 68.55 |
| TraesCS7A01G559500.1 | Wheat | nucleus | 48.31 | 59.69 |
| TraesCS6A01G020500.1 | Wheat | mitochondrion, nucleus | 37.71 | 57.05 |
| GSMUA_Achr2P18410_001 | Banana | nucleus | 9.32 | 53.66 |
| TraesCS3A01G312600.1 | Wheat | nucleus | 55.93 | 52.59 |
| TraesCS6A01G359100.1 | Wheat | mitochondrion | 57.63 | 52.11 |
| TraesCS7A01G551000.1 | Wheat | nucleus | 62.71 | 47.28 |
| TraesCS6A01G020900.1 | Wheat | mitochondrion | 41.95 | 46.92 |
| TraesCS6A01G022700.1 | Wheat | mitochondrion | 43.22 | 44.93 |
| EES06917 | Sorghum | mitochondrion, nucleus | 39.83 | 36.29 |
| TraesCS6A01G359700.1 | Wheat | nucleus | 34.75 | 36.12 |
| Zm00001d013792_P001 | Maize | mitochondrion, nucleus | 41.95 | 35.61 |
| KRG88863 | Soybean | mitochondrion, nucleus | 20.34 | 34.29 |
| Zm00001d016791_P001 | Maize | mitochondrion | 41.1 | 33.8 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.36 | 31.76 |
| KXG38099 | Sorghum | plastid | 41.95 | 31.43 |
| GSMUA_Achr3P08500_001 | Banana | nucleus | 30.51 | 31.3 |
| TraesCS3A01G137500.1 | Wheat | cytosol | 26.27 | 31.16 |
| TraesCS7A01G561000.1 | Wheat | nucleus | 30.51 | 30.77 |
| GSMUA_Achr2P18400_001 | Banana | nucleus | 30.08 | 30.6 |
| GSMUA_Achr3P24560_001 | Banana | nucleus | 30.08 | 30.6 |
| VIT_14s0060g00300.t01 | Wine grape | nucleus | 30.08 | 30.08 |
| AT1G22590.2 | Thale cress | mitochondrion, nucleus | 20.76 | 30.06 |
| PGSC0003DMT400089787 | Potato | cytosol | 22.03 | 29.89 |
| EER91288 | Sorghum | mitochondrion, nucleus | 39.41 | 29.62 |
| Bra005166.1-P | Field mustard | mitochondrion, nucleus | 15.68 | 29.6 |
| KRG89836 | Soybean | nucleus | 18.64 | 29.53 |
| PGSC0003DMT400086956 | Potato | nucleus | 18.22 | 29.25 |
| CDY64992 | Canola | mitochondrion, nucleus | 18.64 | 28.57 |
| CDY33537 | Canola | nucleus | 22.88 | 27.55 |
| KRH30113 | Soybean | nucleus | 19.92 | 27.49 |
| KRH72060 | Soybean | nucleus | 19.92 | 27.49 |
| CDX80580 | Canola | nucleus | 23.31 | 27.23 |
| Bra012335.1-P | Field mustard | mitochondrion | 18.64 | 27.16 |
| Bra024521.1-P | Field mustard | mitochondrion | 18.64 | 27.16 |
| CDY04801 | Canola | mitochondrion, nucleus | 18.64 | 27.16 |
| CDY21372 | Canola | mitochondrion | 18.64 | 27.16 |
| CDY25744 | Canola | mitochondrion | 18.64 | 27.16 |
| CDX88234 | Canola | nucleus | 20.76 | 26.78 |
| TraesCS2A01G146400.1 | Wheat | mitochondrion | 40.25 | 26.69 |
| Bra009913.1-P | Field mustard | nucleus | 22.88 | 26.6 |
| Solyc01g102260.2.1 | Tomato | nucleus | 27.97 | 26.51 |
| TraesCS7A01G398800.1 | Wheat | nucleus | 36.02 | 26.4 |
| KRG97962 | Soybean | nucleus | 26.69 | 26.36 |
| AT5G27810.1 | Thale cress | cytosol, nucleus, plastid | 13.14 | 26.05 |
| KRG98152 | Soybean | nucleus | 20.76 | 25.79 |
| KRG98150 | Soybean | mitochondrion, nucleus | 18.22 | 25.75 |
| KRH30919 | Soybean | nucleus | 26.27 | 25.62 |
| KRH30119 | Soybean | cytosol | 17.37 | 25.47 |
| KRH30476 | Soybean | nucleus | 16.1 | 25.33 |
| AT5G26630.1 | Thale cress | nucleus | 23.31 | 25.23 |
| KRH33740 | Soybean | nucleus | 16.95 | 25.16 |
| KRH30472 | Soybean | nucleus | 22.46 | 25.0 |
| KRG98148 | Soybean | nucleus | 24.15 | 24.89 |
| KRH66052 | Soybean | mitochondrion, nucleus | 23.73 | 24.89 |
| KRG98143 | Soybean | nucleus | 22.03 | 24.64 |
| GSMUA_Achr8P06150_001 | Banana | nucleus | 25.42 | 24.49 |
| KRG98149 | Soybean | nucleus | 21.61 | 23.94 |
| CDY71896 | Canola | nucleus | 17.37 | 23.84 |
| KRH66114 | Soybean | nucleus | 19.07 | 22.73 |
| KRG88915 | Soybean | mitochondrion, nucleus | 19.92 | 22.71 |
| AT5G35120.1 | Thale cress | cytosol | 10.17 | 22.43 |
| PGSC0003DMT400003073 | Potato | cytosol | 10.17 | 22.22 |
| KRH30473 | Soybean | mitochondrion, nucleus | 20.34 | 21.72 |
| KRG98147 | Soybean | mitochondrion, nucleus | 23.31 | 21.4 |
| KRH72066 | Soybean | mitochondrion, nucleus | 18.64 | 21.36 |
| KRG98142 | Soybean | nucleus | 23.73 | 20.97 |
| PGSC0003DMT400095062 | Potato | nucleus | 25.0 | 20.92 |
| PGSC0003DMT400090586 | Potato | nucleus | 20.34 | 20.43 |
| PGSC0003DMT400089454 | Potato | nucleus | 21.19 | 20.41 |
| CDY27735 | Canola | nucleus | 22.46 | 19.85 |
| PGSC0003DMT400088489 | Potato | nucleus | 17.8 | 19.72 |
| AT3G05860.1 | Thale cress | nucleus | 21.61 | 19.62 |
| Bra020555.1-P | Field mustard | nucleus | 17.8 | 19.44 |
| CDY05540 | Canola | nucleus | 17.8 | 19.44 |
| CDY25000 | Canola | nucleus | 17.8 | 19.44 |
| AT1G65300.1 | Thale cress | nucleus | 22.88 | 19.42 |
| Bra018490.1-P | Field mustard | nucleus | 23.73 | 19.31 |
| CDX97329 | Canola | nucleus | 23.73 | 19.31 |
| PGSC0003DMT400088654 | Potato | nucleus | 26.27 | 18.96 |
| AT1G59930.1 | Thale cress | cytosol | 10.59 | 18.94 |
| Bra029469.1-P | Field mustard | nucleus | 24.15 | 18.75 |
| CDY60402 | Canola | nucleus | 24.15 | 18.75 |
| Bra035449.1-P | Field mustard | nucleus | 20.76 | 18.56 |
| PGSC0003DMT400091650 | Potato | nucleus | 20.34 | 18.53 |
| CDY38696 | Canola | nucleus | 21.61 | 18.35 |
| AT1G65330.1 | Thale cress | nucleus | 21.61 | 18.28 |
| Bra035448.1-P | Field mustard | nucleus | 20.34 | 18.18 |
| PGSC0003DMT400090953 | Potato | nucleus | 25.85 | 18.15 |
| Bra039404.1-P | Field mustard | nucleus | 22.88 | 17.88 |
| AT5G48670.1 | Thale cress | nucleus | 24.15 | 17.76 |
| PGSC0003DMT400073719 | Potato | nucleus | 19.49 | 17.62 |
| PGSC0003DMT400095755 | Potato | nucleus | 25.42 | 17.44 |
| KRH30471 | Soybean | nucleus | 22.03 | 17.16 |
| PGSC0003DMT400090516 | Potato | nucleus | 12.71 | 16.95 |
| KRG88914 | Soybean | cytosol | 15.68 | 16.89 |
| CDY18830 | Canola | nucleus | 24.58 | 16.86 |
| KRG88862 | Soybean | nucleus | 22.03 | 16.61 |
| PGSC0003DMT400087890 | Potato | cytosol | 7.63 | 16.07 |
| CDX88231 | Canola | nucleus | 18.64 | 15.94 |
| AT2G28700.1 | Thale cress | nucleus | 22.03 | 15.81 |
| PGSC0003DMT400061726 | Potato | nucleus | 21.61 | 15.6 |
| CDY05207 | Canola | nucleus | 22.03 | 15.57 |
| PGSC0003DMT400095426 | Potato | mitochondrion | 22.88 | 15.47 |
| AT5G27960.1 | Thale cress | nucleus | 20.76 | 15.31 |
| CDX80577 | Canola | mitochondrion, nucleus | 19.49 | 15.28 |
| KRG98146 | Soybean | nucleus | 21.19 | 15.24 |
| Bra041022.1-P | Field mustard | nucleus | 21.19 | 14.97 |
| CDY27734 | Canola | nucleus | 21.19 | 14.88 |
| CDY71564 | Canola | nucleus | 21.19 | 14.75 |
| PGSC0003DMT400088008 | Potato | nucleus | 11.86 | 14.51 |
| Bra020552.1-P | Field mustard | nucleus | 20.76 | 14.37 |
| AT1G31630.1 | Thale cress | mitochondrion | 20.34 | 14.16 |
| PGSC0003DMT400077258 | Potato | nucleus | 23.31 | 14.1 |
| PGSC0003DMT400095417 | Potato | cytosol | 7.63 | 14.06 |
| Bra040248.1-P | Field mustard | nucleus | 24.58 | 14.04 |
| AT5G26650.1 | Thale cress | nucleus | 21.61 | 13.93 |
| AT5G26580.1 | Thale cress | nucleus | 20.34 | 13.91 |
| PGSC0003DMT400061724 | Potato | mitochondrion, nucleus | 22.46 | 13.84 |
| Bra009911.1-P | Field mustard | mitochondrion, nucleus | 21.19 | 13.74 |
| CDY70782 | Canola | nucleus | 18.64 | 13.62 |
| PGSC0003DMT400086919 | Potato | nucleus | 13.56 | 13.01 |
| CDY05333 | Canola | nucleus | 19.92 | 12.47 |
| PGSC0003DMT400085256 | Potato | nucleus | 19.92 | 12.43 |
| CDY67043 | Canola | nucleus | 20.34 | 12.28 |
| CDY05515 | Canola | nucleus | 19.07 | 11.94 |
| Bra020550.1-P | Field mustard | nucleus | 19.07 | 11.84 |
| PGSC0003DMT400085623 | Potato | nucleus | 9.75 | 11.5 |
| Bra020525.1-P | Field mustard | nucleus | 19.07 | 11.39 |
| Bra020524.1-P | Field mustard | nucleus | 16.95 | 11.11 |
| CDY05514 | Canola | nucleus | 16.95 | 11.11 |
| AT1G31640.1 | Thale cress | mitochondrion | 20.76 | 10.56 |
| PGSC0003DMT400086447 | Potato | cytosol | 8.05 | 9.9 |
| PGSC0003DMT400094113 | Potato | cytosol | 7.2 | 9.83 |
| CDY05205 | Canola | cytosol, mitochondrion, nucleus | 6.36 | 9.2 |
| PGSC0003DMT400094378 | Potato | nucleus | 5.93 | 8.97 |
| PGSC0003DMT400085114 | Potato | cytosol, endoplasmic reticulum, nucleus | 10.17 | 8.51 |
| Solyc07g043080.1.1 | Tomato | cytosol | 4.24 | 8.06 |
| PGSC0003DMT400097522 | Potato | cytosol, extracellular, mitochondrion, nucleus | 2.97 | 5.98 |
| PGSC0003DMT400089615 | Potato | cytosol | 5.08 | 5.04 |
| PGSC0003DMT400061722 | Potato | plastid | 1.69 | 3.85 |
| PGSC0003DMT400085093 | Potato | extracellular, plastid, vacuole | 2.97 | 3.48 |
| PGSC0003DMT400091747 | Potato | plastid | 2.12 | 3.29 |
| PGSC0003DMT400065010 | Potato | vacuole | 2.54 | 3.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000982 | GO:GO:0000987 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_SRF-like | PFAM:PF00319 | PFscan:PS50066 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF153 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS6A01G358900 |
| EnsemblPlants:TraesCS6A01G358900.1 | TIGR:cd00266 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:589191604..589192314
Molecular Weight (calculated)
26196.3 Da
IEP (calculated)
5.654
GRAVY (calculated)
-0.450
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MARKKVTLQY IAKDSARRTR FRNRLGSLMK KATELGTMCD VKTCLVVYGE SEAEPQVFPS HAEAVDILNE FKSMPELGHC KKTLDQEAFL TQRITKLRDQ
101: VDKARRECQD SEIRYLLYNI MHGNHPGLVD LSSEELARIG WKVDELLKSL GERMAKNHVQ APPPAPCVSS DNIDMGSLPL YLASPQEEEG WLDMVSSGGD
201: VGTQVCGGNA SHNGGDMMLE TQFSDLGFSS SPFPPM
101: VDKARRECQD SEIRYLLYNI MHGNHPGLVD LSSEELARIG WKVDELLKSL GERMAKNHVQ APPPAPCVSS DNIDMGSLPL YLASPQEEEG WLDMVSSGGD
201: VGTQVCGGNA SHNGGDMMLE TQFSDLGFSS SPFPPM
001: MTRQKVKMTF IENETARKST FKKRKKGLLK KAQELGILCG VPIFAVVNSP YELNPEVWPS REAANQVVSQ WKTMSVMDKT KKMVNQETFL QQRITKATES
101: WKKLRKENKE LEMKNIMFDC LSGKTLVSSI EKTELRDFGY VIEQQLKDVN RRIEILKRNN EPSSALVPVA APTTSSVMPV VEMGSSSVGF YDKVRDQIQI
201: TLNMKQTTND LDLNKKQW
101: WKKLRKENKE LEMKNIMFDC LSGKTLVSSI EKTELRDFGY VIEQQLKDVN RRIEILKRNN EPSSALVPVA APTTSSVMPV VEMGSSSVGF YDKVRDQIQI
201: TLNMKQTTND LDLNKKQW
Arabidopsis Description
MADS-box protein AGL35 [Source:UniProtKB/TrEMBL;Acc:Q7XJK7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.