Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G021100.1 | Wheat | nucleus | 85.51 | 89.39 |
| TraesCS5B01G002500.1 | Wheat | mitochondrion, nucleus | 50.72 | 37.63 |
| TraesCS7B01G020800.1 | Wheat | nucleus | 89.86 | 27.31 |
| Os06t0162800-01 | Rice | nucleus | 88.41 | 27.11 |
| TraesCS7A01G122100.1 | Wheat | nucleus | 86.96 | 26.43 |
| TraesCS7D01G120600.1 | Wheat | nucleus | 86.96 | 26.43 |
| Zm00001d045231_P002 | Maize | nucleus | 85.51 | 26.22 |
| EER89250 | Sorghum | nucleus | 85.51 | 26.22 |
| TraesCS4B01G245700.1 | Wheat | nucleus | 81.16 | 25.93 |
| GSMUA_Achr7P26700_001 | Banana | nucleus | 76.81 | 22.27 |
| TraesCS4B01G245800.1 | Wheat | nucleus | 79.71 | 22.27 |
| KRH70973 | Soybean | nucleus | 78.26 | 22.13 |
| TraesCS5B01G396700.1 | Wheat | nucleus | 75.36 | 22.03 |
| HORVU7Hr1G025700.6 | Barley | nucleus | 86.96 | 21.74 |
| VIT_17s0000g05000.t01 | Wine grape | nucleus | 76.81 | 21.54 |
| KRH75123 | Soybean | nucleus | 76.81 | 21.54 |
| PGSC0003DMT400063315 | Potato | nucleus | 76.81 | 21.54 |
| Solyc03g114840.2.1 | Tomato | nucleus | 76.81 | 21.54 |
| Bra025126.1-P | Field mustard | nucleus | 79.71 | 21.4 |
| TraesCS7B01G158600.1 | Wheat | nucleus | 75.36 | 21.14 |
| CDY02978 | Canola | nucleus | 78.26 | 21.09 |
| CDY51202 | Canola | nucleus | 78.26 | 21.01 |
| GSMUA_Achr4P14460_001 | Banana | nucleus | 72.46 | 20.83 |
| TraesCS5B01G286100.2 | Wheat | nucleus | 75.36 | 20.63 |
| AT2G03710.1 | Thale cress | nucleus | 76.81 | 20.54 |
| CDY04164 | Canola | nucleus | 76.81 | 20.54 |
| TraesCS4B01G277800.1 | Wheat | nucleus | 72.46 | 20.24 |
| TraesCS5B01G396600.2 | Wheat | nucleus | 71.01 | 19.52 |
| Bra026543.1-P | Field mustard | nucleus | 73.91 | 18.96 |
| TraesCS5B01G115100.1 | Wheat | nucleus | 68.12 | 18.65 |
| TraesCS6B01G286400.1 | Wheat | nucleus | 69.57 | 18.53 |
| TraesCS5B01G002400.1 | Wheat | nucleus | 59.42 | 17.67 |
| TraesCS7B01G009900.1 | Wheat | mitochondrion, nucleus | 47.83 | 17.65 |
| TraesCS1B01G273300.1 | Wheat | nucleus | 65.22 | 17.65 |
| TraesCS7B01G009800.1 | Wheat | nucleus | 57.97 | 17.39 |
| TraesCS7B01G009500.1 | Wheat | nucleus | 57.97 | 17.39 |
| CDY33113 | Canola | nucleus | 76.81 | 17.15 |
| TraesCS1B01G144800.1 | Wheat | nucleus | 66.67 | 17.1 |
| TraesCS6B01G322700.2 | Wheat | nucleus | 59.42 | 17.01 |
| TraesCS2B01G200800.1 | Wheat | nucleus | 65.22 | 16.85 |
| TraesCS2B01G344000.1 | Wheat | nucleus | 57.97 | 16.67 |
| TraesCS2B01G281000.1 | Wheat | nucleus | 65.22 | 16.42 |
| TraesCS1B01G058100.1 | Wheat | nucleus | 53.62 | 15.23 |
| TraesCS3B01G157500.4 | Wheat | nucleus | 66.67 | 14.84 |
| TraesCS1B01G058300.1 | Wheat | nucleus | 50.72 | 14.83 |
| TraesCS1B01G058200.1 | Wheat | nucleus | 47.83 | 14.8 |
| Bra017376.1-P | Field mustard | nucleus | 50.72 | 14.4 |
| TraesCS7B01G021000.1 | Wheat | nucleus | 13.04 | 4.81 |
| CDY49686 | Canola | nucleus | 1.45 | 0.58 |
| CDY45709 | Canola | nucleus | 1.45 | 0.58 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 | InterPro:MADS_MEF2-like |
| PFAM:PF00319 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF274 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS7B01G020900 |
| EnsemblPlants:TraesCS7B01G020900.1 | TIGR:cd00265 | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:18505319..18506211
Molecular Weight (calculated)
7839.7 Da
IEP (calculated)
11.072
GRAVY (calculated)
0.035
Length
69 amino acids
Sequence
(BLAST)
(BLAST)
1: MGRGKVELKR IDNKVSRQVT FAKRRNGLLK KAYELSVLCD AVVALIIFST RGRLFEFSTS SYMAVRVDV
001: MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS PSGMARTVDK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KVAIGIFYRK KLKPFVI
101: RVEILQHSQR HLLGEELSEM DVNELEHLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KVAIGIFYRK KLKPFVI
Arabidopsis Description
AGL3Agamous-like MADS-box protein AGL3 [Source:UniProtKB/Swiss-Prot;Acc:P29383]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.