Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 3
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G351500.1 | Wheat | nucleus | 76.24 | 93.9 |
| TraesCS4D01G346300.1 | Wheat | nucleus | 86.63 | 84.54 |
| HORVU3Hr1G095240.2 | Barley | nucleus | 66.34 | 84.28 |
| TraesCS3A01G435000.1 | Wheat | nucleus | 68.81 | 83.23 |
| TraesCS3A01G434400.1 | Wheat | nucleus | 65.84 | 79.64 |
| TraesCS3A01G434900.1 | Wheat | nucleus | 63.37 | 76.65 |
| TraesCS3A01G432900.1 | Wheat | mitochondrion, nucleus | 53.96 | 65.66 |
| OQU86329 | Sorghum | nucleus | 52.97 | 62.57 |
| Zm00001d039913_P002 | Maize | nucleus | 53.47 | 62.07 |
| Solyc10g017640.1.1 | Tomato | nucleus | 18.32 | 60.66 |
| TraesCS3A01G434700.1 | Wheat | nucleus | 28.71 | 56.86 |
| KRH48297 | Soybean | nucleus | 22.77 | 51.69 |
| GSMUA_Achr8P09250_001 | Banana | nucleus | 29.21 | 46.83 |
| TraesCS7A01G260900.1 | Wheat | nucleus | 35.64 | 35.12 |
| TraesCS5A01G515500.1 | Wheat | nucleus | 32.18 | 29.55 |
| KRH00625 | Soybean | nucleus | 30.2 | 29.19 |
| KRH40554 | Soybean | nucleus | 30.2 | 28.91 |
| CDY69077 | Canola | nucleus | 29.21 | 27.7 |
| AT2G45660.1 | Thale cress | nucleus | 29.21 | 27.57 |
| CDY37054 | Canola | nucleus | 28.71 | 27.23 |
| CDY53886 | Canola | nucleus | 28.71 | 27.23 |
| CDX74755 | Canola | nucleus | 28.71 | 27.23 |
| Bra039324.1-P | Field mustard | nucleus | 28.71 | 27.23 |
| Bra004928.1-P | Field mustard | nucleus | 28.71 | 27.23 |
| Bra000393.1-P | Field mustard | nucleus | 28.71 | 27.23 |
| CDY60689 | Canola | nucleus | 28.71 | 27.23 |
| CDY27368 | Canola | nucleus | 28.22 | 26.76 |
| TraesCS1A01G199600.2 | Wheat | nucleus | 30.2 | 26.52 |
| TraesCS6A01G011700.1 | Wheat | nucleus | 34.16 | 26.34 |
| TraesCS1A01G199900.1 | Wheat | nucleus | 29.21 | 25.88 |
| PGSC0003DMT400000028 | Potato | nucleus | 27.72 | 25.0 |
| KRH65189 | Soybean | nucleus | 28.22 | 24.05 |
| PGSC0003DMT400026576 | Potato | nucleus | 25.25 | 23.83 |
| KRH48299 | Soybean | nucleus | 5.45 | 8.03 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PRINTS:PR00404 | PFscan:PS50066 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF359 |
| SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS5A01G520200 | EnsemblPlants:TraesCS5A01G520200.1 |
| TIGR:cd00265 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr5A:+:681001943..681004207
Molecular Weight (calculated)
22724.6 Da
IEP (calculated)
10.528
GRAVY (calculated)
-0.966
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDPVPSLSL IFARSPHHPL QSSRDVRQRA SGNRRRRRAM ARRGPVELRR IEDRTSRQVR FSKRRSGLFK KAFELGLLCD AEVALLVFSP AGRLYEYASS
101: SIEDTYDRYQ AFGGAGKNLN EGGASTNNDK DPSNIQSRLK EIASWSLQNN ADDSDANELE KLEKLLTDAL ENTKSKKMLA QRNRGARGGN SISPREQEEG
201: RS
101: SIEDTYDRYQ AFGGAGKNLN EGGASTNNDK DPSNIQSRLK EIASWSLQNN ADDSDANELE KLEKLLTDAL ENTKSKKMLA QRNRGARGGN SISPREQEEG
201: RS
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKVK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKVK
Arabidopsis Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.