Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G045500.1 | Wheat | nucleus | 92.59 | 92.59 |
| TraesCS1A01G044900.1 | Wheat | nucleus | 90.95 | 90.95 |
| TraesCS1B01G058300.1 | Wheat | nucleus | 79.84 | 82.2 |
| TraesCS1B01G058200.1 | Wheat | nucleus | 70.37 | 76.68 |
| Os06t0347700-00 | Rice | nucleus | 44.86 | 74.15 |
| TraesCS7B01G021100.1 | Wheat | nucleus | 15.23 | 56.06 |
| TraesCS2B01G344000.1 | Wheat | nucleus | 54.32 | 55.0 |
| GSMUA_Achr3P07310_001 | Banana | nucleus | 54.32 | 54.1 |
| TraesCS5B01G002500.1 | Wheat | mitochondrion, nucleus | 20.58 | 53.76 |
| TraesCS7B01G020900.1 | Wheat | nucleus | 15.23 | 53.62 |
| GSMUA_Achr7P12610_001 | Banana | nucleus | 47.74 | 49.36 |
| CDX72465 | Canola | nucleus | 47.74 | 48.33 |
| TraesCS7B01G009800.1 | Wheat | nucleus | 45.68 | 48.26 |
| GSMUA_Achr9P15540_001 | Banana | nucleus | 48.56 | 48.16 |
| TraesCS6B01G322700.2 | Wheat | nucleus | 47.33 | 47.72 |
| TraesCS7B01G009900.1 | Wheat | mitochondrion, nucleus | 36.63 | 47.59 |
| CDY49287 | Canola | nucleus | 46.91 | 47.5 |
| Bra017638.1-P | Field mustard | nucleus | 46.91 | 47.5 |
| GSMUA_Achr5P24560_001 | Banana | nucleus | 46.09 | 47.46 |
| TraesCS7B01G009500.1 | Wheat | nucleus | 44.86 | 47.39 |
| CDX69036 | Canola | nucleus | 46.09 | 46.67 |
| AT3G57230.1 | Thale cress | nucleus | 46.09 | 46.67 |
| CDX75412 | Canola | nucleus | 45.68 | 46.25 |
| TraesCS5B01G002400.1 | Wheat | nucleus | 44.03 | 46.12 |
| KRH42047 | Soybean | nucleus | 45.27 | 45.64 |
| Bra011509.1-P | Field mustard | nucleus | 41.98 | 35.17 |
| Solyc01g106170.2.1 | Tomato | mitochondrion | 21.4 | 35.14 |
| TraesCS7B01G020800.1 | Wheat | nucleus | 31.28 | 33.48 |
| TraesCS4B01G245700.1 | Wheat | nucleus | 29.22 | 32.87 |
| TraesCS5B01G396600.2 | Wheat | nucleus | 33.74 | 32.67 |
| TraesCS5B01G115100.1 | Wheat | nucleus | 33.33 | 32.14 |
| TraesCS5B01G396700.1 | Wheat | nucleus | 30.86 | 31.78 |
| TraesCS2B01G281000.1 | Wheat | nucleus | 35.8 | 31.75 |
| TraesCS5B01G286100.2 | Wheat | nucleus | 32.92 | 31.75 |
| TraesCS1B01G273300.1 | Wheat | nucleus | 32.92 | 31.37 |
| TraesCS2B01G200800.1 | Wheat | nucleus | 33.74 | 30.71 |
| TraesCS7B01G158600.1 | Wheat | nucleus | 30.86 | 30.49 |
| TraesCS6B01G286400.1 | Wheat | nucleus | 32.1 | 30.12 |
| TraesCS4B01G245800.1 | Wheat | nucleus | 30.45 | 29.96 |
| TraesCS4B01G277800.1 | Wheat | nucleus | 29.63 | 29.15 |
| TraesCS1B01G144800.1 | Wheat | nucleus | 31.69 | 28.62 |
| TraesCS3B01G157500.4 | Wheat | nucleus | 34.98 | 27.42 |
| TraesCS7B01G021000.1 | Wheat | nucleus | 18.11 | 23.53 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF263 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS1B01G058100 | EnsemblPlants:TraesCS1B01G058100.1 | TIGR:cd00265 | SEG:seg |
Description
No Description!
Coordinates
chr1B:+:40195573..40199613
Molecular Weight (calculated)
27659.8 Da
IEP (calculated)
8.456
GRAVY (calculated)
-0.760
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTVIKR IENTTSRQVT FSKRKSGLFK KARELGVLCD AQVGVLLFSN TGRLYDYSNS NSGMKSIIER YQHVKEGQQF MSASAEAKFW QAEGERLRQQ
101: LQNLQENHRQ LLGQHLSGLG LEDLRGLENQ LETSINNIRL TKDQLMIDEI EDLNKKESLV HQENIELHKK LNVIRQENIY LQNKLNGEAE VNGTITSSSS
201: QYSTAAREDP VRLELGHPDH AQMDEQPESP TLGLKISTTR TAR
101: LQNLQENHRQ LLGQHLSGLG LEDLRGLENQ LETSINNIRL TKDQLMIDEI EDLNKKESLV HQENIELHKK LNVIRQENIY LQNKLNGEAE VNGTITSSSS
201: QYSTAAREDP VRLELGHPDH AQMDEQPESP TLGLKISTTR TAR
001: MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KAKELSILCD AEVGVIIFSS TGKLYDYASN SSMKTIIERY NRVKEEQHQL LNHASEIKFW QREVASLQQQ
101: LQYLQECHRK LVGEELSGMN ANDLQNLEDQ LVTSLKGVRL KKDQLMTNEI RELNRKGQII QKENHELQNI VDIMRKENIK LQKKVHGRTN AIEGNSSVDP
201: ISNGTTTYAP PQLQLIQLQP APREKSIRLG LQLS
101: LQYLQECHRK LVGEELSGMN ANDLQNLEDQ LVTSLKGVRL KKDQLMTNEI RELNRKGQII QKENHELQNI VDIMRKENIK LQKKVHGRTN AIEGNSSVDP
201: ISNGTTTYAP PQLQLIQLQP APREKSIRLG LQLS
Arabidopsis Description
ANR1AGAMOUS-like 44 [Source:TAIR;Acc:AT2G14210]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.