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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • nucleus 3
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G18960.1 TraesCS6A01G259000.2 AT2G45650.1 9418042
AT4G18960.1 TraesCS6B01G286400.1 AT2G45650.1 9418042
AT4G18960.1 TraesCS6D01G240200.3 AT2G45650.1 9418042
AT4G18960.1 TraesCS5A01G286800.1 AT3G02310.1 15604664
AT4G18960.1 TraesCS5B01G286100.2 AT3G02310.1 15604664
AT4G18960.1 TraesCS5D01G294500.1 AT3G02310.1 15604664
AT4G18960.1 TraesCS7A01G260600.1 AT3G02310.1 15604664
AT4G18960.1 TraesCS7B01G158600.1 AT3G02310.1 15604664
AT4G18960.1 TraesCS7D01G261600.1 AT3G02310.1 15604664
AT4G18960.1 TraesCS5A01G286800.1 AT3G02310.1 15805477
AT4G18960.1 TraesCS5B01G286100.2 AT3G02310.1 15805477
AT4G18960.1 TraesCS5D01G294500.1 AT3G02310.1 15805477
AT4G18960.1 TraesCS7A01G260600.1 AT3G02310.1 15805477
AT4G18960.1 TraesCS7B01G158600.1 AT3G02310.1 15805477
AT4G18960.1 TraesCS7D01G261600.1 AT3G02310.1 15805477
AT4G18960.1 TraesCS5A01G286800.1 AT3G02310.1 9418042
AT4G18960.1 TraesCS5B01G286100.2 AT3G02310.1 9418042
AT4G18960.1 TraesCS5D01G294500.1 AT3G02310.1 9418042
AT4G18960.1 TraesCS7A01G260600.1 AT3G02310.1 9418042
AT4G18960.1 TraesCS7B01G158600.1 AT3G02310.1 9418042
AT4G18960.1 TraesCS7D01G261600.1 AT3G02310.1 9418042
AT4G18960.1 TraesCS1A01G044900.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS1A01G045000.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS1B01G058100.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS1B01G058200.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS1B01G058300.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS1D01G045500.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS1D01G045600.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS1D01G045700.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS2A01G337900.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS2B01G344000.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS2D01G325000.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS5B01G002400.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS5D01G002200.2 AT3G57230.1 15805477
AT4G18960.1 TraesCS6A01G292300.2 AT3G57230.1 15805477
AT4G18960.1 TraesCS6B01G322700.2 AT3G57230.1 15805477
AT4G18960.1 TraesCS6D01G273500.2 AT3G57230.1 15805477
AT4G18960.1 TraesCS7A01G111700.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS7A01G111800.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS7A01G111900.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS7B01G009500.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS7B01G009800.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS7D01G106600.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS7D01G106900.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS7D01G107200.1 AT3G57230.1 15805477
AT4G18960.1 TraesCSU01G209900.1 AT3G57230.1 15805477
AT4G18960.1 TraesCS6A01G259000.2 AT3G61120.1 15805477
AT4G18960.1 TraesCS6B01G286400.1 AT3G61120.1 15805477
AT4G18960.1 TraesCS6D01G240200.3 AT3G61120.1 15805477
AT4G18960.1 TraesCS1A01G125800.1 AT4G18960.1 14555696
AT4G18960.1 TraesCS1A01G262700.1 AT4G18960.1 14555696
AT4G18960.1 TraesCS1B01G144800.1 AT4G18960.1 14555696
AT4G18960.1 TraesCS1B01G273300.1 AT4G18960.1 14555696
AT4G18960.1 TraesCS1D01G127700.1 AT4G18960.1 14555696
AT4G18960.1 TraesCS1D01G262700.1 AT4G18960.1 14555696
AT4G18960.1 TraesCS3A01G314300.1 AT4G18960.1 14555696
AT4G18960.1 TraesCS3B01G157500.4 AT4G18960.1 14555696
AT4G18960.1 TraesCS3D01G140200.2 AT4G18960.1 14555696
AT4G18960.1 TraesCS5A01G117500.1 AT4G18960.1 14555696
AT4G18960.1 TraesCS5B01G115100.1 AT4G18960.1 14555696
AT4G18960.1 TraesCS5D01G118200.1 AT4G18960.1 14555696
AT4G18960.1 TraesCS4A01G002600.1 AT4G24540.1 15805477
AT4G18960.1 TraesCS4B01G302600.2 AT4G24540.1 15805477
AT4G18960.1 TraesCS4D01G301100.1 AT4G24540.1 15805477
AT4G18960.1 TraesCS6A01G313800.1 AT4G24540.1 15805477
AT4G18960.1 TraesCS6B01G343900.1 AT4G24540.1 15805477
AT4G18960.1 TraesCS6D01G293200.1 AT4G24540.1 15805477
AT4G18960.1 TraesCS7A01G175200.2 AT4G24540.1 15805477
AT4G18960.1 TraesCS7B01G080300.2 AT4G24540.1 15805477
AT4G18960.1 TraesCS7D01G176700.1 AT4G24540.1 15805477
AT4G18960.1 TraesCS2A01G174300.3 AT5G60910.1 15805477
AT4G18960.1 TraesCS2A01G261200.2 AT5G60910.1 15805477
AT4G18960.1 TraesCS2B01G200800.1 AT5G60910.1 15805477
AT4G18960.1 TraesCS2B01G281000.1 AT5G60910.1 15805477
AT4G18960.1 TraesCS2D01G181400.3 AT5G60910.1 15805477
AT4G18960.1 TraesCS2D01G262700.1 AT5G60910.1 15805477
AT4G18960.1 TraesCS5A01G391700.1 AT5G60910.1 15805477
AT4G18960.1 TraesCS5B01G396600.2 AT5G60910.1 15805477
AT4G18960.1 TraesCS5D01G401500.1 AT5G60910.1 15805477
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1D01G127700.1 Wheat nucleus 99.26 99.26
TraesCS1B01G144800.1 Wheat nucleus 98.51 98.51
HORVU1Hr1G029220.1 Barley nucleus 92.94 76.69
Os05t0203800-02 Rice nucleus 76.95 76.1
KRH14461 Soybean nucleus 27.14 70.19
GSMUA_Achr10P... Banana nucleus 55.02 64.63
TraesCS3A01G314300.1 Wheat nucleus 65.43 64.47
OQU77603 Sorghum nucleus 69.52 64.04
VIT_10s0003g02070.t01 Wine grape nucleus 52.42 62.39
Zm00001d037737_P001 Maize nucleus 67.66 59.48
CDY09267 Canola nucleus 54.65 59.04
Solyc02g071730.2.1 Tomato nucleus 54.28 58.87
KRH21150 Soybean nucleus 53.16 58.85
CDX78909 Canola nucleus 55.02 58.73
Bra013364.1-P Field mustard nucleus 55.02 58.73
PGSC0003DMT400073134 Potato nucleus 53.9 58.47
KRH42930 Soybean nucleus 52.79 58.44
CDX98597 Canola nucleus 54.28 58.17
Bra012564.1-P Field mustard nucleus 54.28 58.17
GSMUA_Achr6P14760_001 Banana nucleus 54.65 57.87
AT4G18960.1 Thale cress nucleus 53.9 57.54
KRH59043 Soybean nucleus 51.67 57.2
KRH73684 Soybean nucleus 51.67 56.5
KRG98899 Soybean nucleus 51.3 56.1
KRH46066 Soybean nucleus 51.3 55.87
TraesCS5A01G117500.1 Wheat nucleus 50.19 53.15
Bra004716.1-P Field mustard nucleus 47.96 52.87
CDX79857 Canola nucleus 47.96 52.87
Bra007419.1-P Field mustard nucleus 47.58 52.24
Bra014552.1-P Field mustard nucleus 47.96 52.02
CDX98330 Canola nucleus 47.96 52.02
Solyc07g055920.2.1 Tomato nucleus 51.3 51.69
PGSC0003DMT400044552 Potato nucleus 48.7 51.57
AT2G42830.2 Thale cress nucleus 47.21 51.21
VIT_12s0142g00360.t01 Wine grape nucleus 50.56 49.63
CDX99406 Canola nucleus 55.39 47.76
AT3G58780.4 Thale cress nucleus 49.44 47.33
GSMUA_Achr10P... Banana nucleus 55.76 47.02
CDY49254 Canola nucleus 47.96 46.91
CDX89005 Canola nucleus 47.58 46.38
CDY00589 Canola nucleus 47.21 46.18
TraesCS1A01G262700.1 Wheat endoplasmic reticulum 46.47 45.45
Bra003356.1-P Field mustard nucleus 43.49 42.86
TraesCS4A01G058900.1 Wheat nucleus 24.91 39.41
TraesCS4A01G028200.1 Wheat nucleus 32.71 37.93
TraesCS7A01G122000.1 Wheat nucleus 31.97 37.89
CDX67765 Canola nucleus 48.7 37.64
TraesCS7A01G122100.1 Wheat nucleus 31.6 37.44
TraesCS5A01G391800.1 Wheat nucleus 33.09 37.4
TraesCS4A01G028100.1 Wheat nucleus 32.71 36.36
TraesCS1A01G045000.1 Wheat nucleus 26.77 36.36
TraesCS6A01G292300.2 Wheat nucleus 32.34 36.1
TraesCS5A01G286800.1 Wheat nucleus 32.71 34.92
TraesCS7A01G260600.1 Wheat nucleus 31.23 33.87
TraesCS5A01G391700.1 Wheat nucleus 30.48 33.61
TraesCS7A01G111900.1 Wheat nucleus 28.25 33.04
TraesCS6A01G259000.2 Wheat nucleus 35.32 32.76
TraesCS7A01G111800.1 Wheat nucleus 27.88 32.61
TraesCS2A01G337900.1 Wheat nucleus 28.62 32.08
TraesCS7A01G111700.1 Wheat nucleus 28.25 31.93
TraesCS2A01G174300.3 Wheat nucleus 30.48 30.71
TraesCS1A01G044900.1 Wheat nucleus 27.51 30.45
TraesCS2A01G261200.2 Wheat nucleus 30.86 30.29
TraesCS4A01G078700.1 Wheat nucleus 19.7 24.2
Protein Annotations
MapMan:15.5.14Gene3D:3.40.1810.10ncoils:CoilGO:GO:0000977GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0045944GO:GO:0046983InterPro:IPR002100InterPro:IPR002487
InterPro:IPR036879InterPro:MADS_MEF2-likePFAM:PF00319PFAM:PF01486PRINTS:PR00404ScanProsite:PS00350
PFscan:PS50066PFscan:PS51297PANTHER:PTHR11945PANTHER:PTHR11945:SF332SMART:SM00432SUPFAM:SSF55455
InterPro:TF_KboxInterPro:TF_MADSboxInterPro:TF_MADSbox_sfEnsemblPlantsGene:TraesCS1A01G125800EnsemblPlants:TraesCS1A01G125800.1TIGR:cd00265
SEG:seg:::::
Description
No Description!
Coordinates
chr1A:-:150450040..150456925
Molecular Weight (calculated)
30369.1 Da
IEP (calculated)
9.522
GRAVY (calculated)
-0.754
Length
269 amino acids
Sequence
(BLAST)
001: MQILNEQLAA PSTGLMVKES ASPGSGSGSA GGAAEKMGRG RIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSGRGRL YEYSNNSVKA
101: TIERYKKATS DTSSAGTVAE INAQHYQQES AKLKQQITTL QNSNRTLIGD TMATMSHRDL KQLEGRLDKG LGKIRARKNE LLCAEIEYMQ RREMELQNNN
201: FFLREKVAET ERGQQQTLNM MGAASTSNEY EQNMIHCDPR TFLQFNFMQQ HPQYCSQQED RKSFNSVGR
Best Arabidopsis Sequence Match ( AT3G58780.1 )
(BLAST)
001: MEEGGSSHDA ESSKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL VIFSTRGRLY EYANNSVRGT IERYKKACSD AVNPPSVTEA
101: NTQYYQQEAS KLRRQIRDIQ NSNRHIVGES LGSLNFKELK NLEGRLEKGI SRVRSKKNEL LVAEIEYMQK REMELQHNNM YLRAKIAEGA RLNPDQQESS
201: VIQGTTVYES GVSSHDQSQH YNRNYIPVNL LEPNQQFSGQ DQPPLQLV
Arabidopsis Description
SHP1K-box region and MADS-box transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LM26]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.