CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88077
EER90862
EER95753
EER97012
EER97510
EES00105
EES01878
EES07448
EES15309
EES15827
KXG23502
KXG26975
KXG31156
KXG40019
OQU77603
OQU80503
OQU81712
OQU85202
OQU85464

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18960.1	EES07448	AT2G45650.1	9418042
AT4G18960.1	KXG26975	AT2G45650.1	9418042
AT4G18960.1	EER97012	AT3G02310.1	15604664
AT4G18960.1	EES15309	AT3G02310.1	15604664
AT4G18960.1	EER97012	AT3G02310.1	15805477
AT4G18960.1	EES15309	AT3G02310.1	15805477
AT4G18960.1	EER97012	AT3G02310.1	9418042
AT4G18960.1	EES15309	AT3G02310.1	9418042
AT4G18960.1	OQU80503	AT3G57230.1	15805477
AT4G18960.1	OQU81712	AT3G57230.1	15805477
AT4G18960.1	OQU85202	AT3G57230.1	15805477
AT4G18960.1	OQU85464	AT3G57230.1	15805477
AT4G18960.1	EES07448	AT3G61120.1	15805477
AT4G18960.1	KXG26975	AT3G61120.1	15805477
AT4G18960.1	EES00105	AT4G18960.1	14555696
AT4G18960.1	EES01878	AT4G18960.1	14555696
AT4G18960.1	EES15827	AT4G18960.1	14555696
AT4G18960.1	OQU77603	AT4G18960.1	14555696
AT4G18960.1	EER88077	AT4G24540.1	15805477
AT4G18960.1	KXG31156	AT4G24540.1	15805477
AT4G18960.1	KXG40019	AT4G24540.1	15805477
AT4G18960.1	EER90862	AT5G60910.1	15805477
AT4G18960.1	EER95753	AT5G60910.1	15805477
AT4G18960.1	EER97510	AT5G60910.1	15805477
AT4G18960.1	KXG23502	AT5G60910.1	15805477

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037737_P001	Maize	nucleus	89.73	85.62
TraesCS1D01G127700.1	Wheat	nucleus	64.38	69.89
TraesCS1A01G125800.1	Wheat	nucleus	64.04	69.52
TraesCS1B01G144800.1	Wheat	nucleus	63.7	69.14
Os05t0203800-02	Rice	nucleus	62.33	66.91
KRH14461	Soybean	nucleus	23.29	65.38
GSMUA_Achr10P...	Banana	nucleus	48.29	61.57
VIT_10s0003g02070.t01	Wine grape	nucleus	47.26	61.06
EES00105	Sorghum	nucleus	53.08	57.62
CDY09267	Canola	nucleus	48.97	57.43
HORVU1Hr1G029220.1	Barley	nucleus	64.04	57.36
Bra013364.1-P	Field mustard	nucleus	49.32	57.14
CDX78909	Canola	nucleus	49.32	57.14
AT4G18960.1	Thale cress	nucleus	48.97	56.75
KRH21150	Soybean	nucleus	46.92	56.38
Bra012564.1-P	Field mustard	nucleus	48.29	56.18
CDX98597	Canola	nucleus	48.29	56.18
PGSC0003DMT400073134	Potato	nucleus	46.92	55.24
KRH42930	Soybean	nucleus	45.89	55.14
Solyc02g071730.2.1	Tomato	nucleus	46.58	54.84
GSMUA_Achr6P14760_001	Banana	nucleus	46.58	53.54
KRH59043	Soybean	nucleus	44.52	53.5
KRH46066	Soybean	nucleus	44.52	52.63
KRG98899	Soybean	nucleus	44.18	52.44
KRH73684	Soybean	nucleus	43.49	51.63
Solyc07g055920.2.1	Tomato	nucleus	46.58	50.94
PGSC0003DMT400044552	Potato	nucleus	43.49	50.0
Bra004716.1-P	Field mustard	nucleus	41.1	49.18
CDX79857	Canola	nucleus	41.1	49.18
Bra014552.1-P	Field mustard	nucleus	41.44	48.79
AT2G42830.2	Thale cress	nucleus	41.44	48.79
VIT_12s0142g00360.t01	Wine grape	nucleus	45.55	48.54
Bra007419.1-P	Field mustard	nucleus	40.41	48.16
CDX98330	Canola	nucleus	40.75	47.98
EES15827	Sorghum	nucleus	42.81	46.47
CDX99406	Canola	nucleus	48.97	45.83
EES01878	Sorghum	nucleus	43.15	45.49
GSMUA_Achr10P...	Banana	nucleus	48.97	44.83
CDY00589	Canola	nucleus	41.78	44.36
CDX89005	Canola	nucleus	41.1	43.48
CDY49254	Canola	nucleus	40.41	42.91
AT3G58780.4	Thale cress	nucleus	40.75	42.35
Bra003356.1-P	Field mustard	nucleus	37.33	39.93
EER89250	Sorghum	nucleus	29.79	38.67
KXG37536	Sorghum	nucleus	30.48	36.93
OQU85464	Sorghum	nucleus	29.79	35.95
OQU93000	Sorghum	nucleus	29.79	35.8
KXG26975	Sorghum	nucleus	28.42	35.32
EES07448	Sorghum	nucleus	30.48	34.9
EER97012	Sorghum	nucleus	28.77	34.57
CDX67765	Canola	nucleus	40.75	34.2
EES15309	Sorghum	nucleus	27.74	33.61
OQU80503	Sorghum	nucleus	26.03	33.19
EER90862	Sorghum	nucleus	27.74	33.06
OQU85202	Sorghum	nucleus	26.71	32.5
OQU81712	Sorghum	nucleus	26.03	31.8
EER97510	Sorghum	nucleus	27.4	31.62
EER95753	Sorghum	nucleus	27.4	29.63
KXG23502	Sorghum	nucleus	22.26	29.15

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A1Z5R1D9	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	EnsemblPlants:OQU77603	ProteinID:OQU77603
ProteinID:OQU77603.1	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF332	SMART:SM00432	EnsemblPlantsGene:SORBI_3009G075500	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0001C809B0	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:9805393..9815499

Molecular Weight (calculated)

32955.2 Da

IEP (calculated)

9.825

GRAVY (calculated)

-0.712

Length

292 amino acids

Sequence
(BLAST)

001: MHIREEQAMP STVTGIMVST LTSAGLKLKE PATMSPGGSA SVAAGFGSAA ERNNGRGKGK TEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL
101: IVFSSRGRLY EYSNNSVKAT IERYKKANSD NSSAAGTIAE VTIQHYKQES ARLRQQITNL QNSNSPQCFR ALIGDITTMS PKDLKHLETR LDKALGKIRA
201: RKNEVLCSEL EYMQRREMEL QNDNLYLRSR VDENERAQQT VNMMGAPSTS DYQQQGFIPY DPIRSFLQFN IMQQPQFYSQ QEDRKDFNLG GR

Best Arabidopsis Sequence Match ( AT4G18960.1 )
(BLAST)

001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV

Arabidopsis Description

AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.