Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78909 | Canola | nucleus | 95.58 | 94.44 |
| CDX98597 | Canola | nucleus | 93.98 | 93.23 |
| AT4G18960.1 | Thale cress | nucleus | 93.57 | 92.46 |
| CDY01574 | Canola | nucleus | 44.98 | 91.06 |
| CDY13236 | Canola | mitochondrion | 69.08 | 85.57 |
| VIT_10s0003g02070.t01 | Wine grape | nucleus | 69.48 | 76.55 |
| CDX99406 | Canola | nucleus | 95.18 | 75.96 |
| CDY72391 | Canola | nucleus | 22.49 | 74.67 |
| KRH21150 | Soybean | nucleus | 69.88 | 71.6 |
| PGSC0003DMT400073134 | Potato | nucleus | 69.48 | 69.76 |
| Solyc02g071730.2.1 | Tomato | nucleus | 69.48 | 69.76 |
| CDX71922 | Canola | nucleus | 37.75 | 69.63 |
| KRH42930 | Soybean | nucleus | 64.66 | 66.26 |
| GSMUA_Achr10P... | Banana | nucleus | 60.64 | 65.94 |
| KRH59043 | Soybean | nucleus | 63.86 | 65.43 |
| CDX79856 | Canola | nucleus | 23.29 | 65.17 |
| GSMUA_Achr5P06590_001 | Banana | nucleus | 45.38 | 64.57 |
| CDY60686 | Canola | cytosol, nucleus, plastid | 16.87 | 62.69 |
| CDX98330 | Canola | nucleus | 60.64 | 60.89 |
| CDX90741 | Canola | nucleus | 55.42 | 59.74 |
| GSMUA_Achr6P14760_001 | Banana | nucleus | 60.64 | 59.45 |
| CDX79857 | Canola | nucleus | 57.83 | 59.02 |
| Zm00001d039434_P001 | Maize | nucleus | 61.04 | 58.02 |
| EES00105 | Sorghum | nucleus | 62.65 | 57.99 |
| TraesCS3D01G140200.2 | Wheat | nucleus | 62.65 | 56.93 |
| HORVU3Hr1G026650.1 | Barley | nucleus | 61.45 | 56.46 |
| TraesCS3A01G314300.1 | Wheat | nucleus | 61.45 | 56.04 |
| TraesCS1B01G144800.1 | Wheat | nucleus | 59.84 | 55.39 |
| TraesCS1D01G262700.1 | Wheat | nucleus | 55.42 | 55.2 |
| TraesCS1D01G127700.1 | Wheat | nucleus | 59.44 | 55.02 |
| Os01t0201700-02 | Rice | nucleus | 60.64 | 54.71 |
| TraesCS1A01G125800.1 | Wheat | nucleus | 59.04 | 54.65 |
| TraesCS1B01G273300.1 | Wheat | nucleus | 55.42 | 54.12 |
| Os05t0203800-02 | Rice | nucleus | 58.23 | 53.31 |
| CDY49254 | Canola | nucleus | 58.63 | 53.09 |
| Zm00001d042591_P002 | Maize | nucleus | 57.03 | 52.99 |
| CDX89005 | Canola | nucleus | 58.63 | 52.9 |
| HORVU1Hr1G023620.1 | Barley | nucleus | 53.01 | 52.38 |
| CDY00589 | Canola | nucleus | 57.83 | 52.36 |
| EES01878 | Sorghum | nucleus | 58.23 | 52.35 |
| TraesCS5B01G115100.1 | Wheat | nucleus | 52.61 | 51.98 |
| TraesCS5D01G118200.1 | Wheat | nucleus | 52.61 | 51.98 |
| Os01t0886200-01 | Rice | nucleus | 55.02 | 51.7 |
| TraesCS5A01G117500.1 | Wheat | nucleus | 52.21 | 51.18 |
| TraesCS1A01G262700.1 | Wheat | endoplasmic reticulum | 55.42 | 50.18 |
| TraesCS3B01G157500.4 | Wheat | nucleus | 61.85 | 49.68 |
| OQU77603 | Sorghum | nucleus | 57.43 | 48.97 |
| GSMUA_Achr10P... | Banana | nucleus | 62.65 | 48.9 |
| Os12t0207000-01 | Rice | nucleus | 53.01 | 48.89 |
| Zm00001d023955_P003 | Maize | nucleus | 51.41 | 48.3 |
| CDY65347 | Canola | nucleus | 30.12 | 47.47 |
| EES15827 | Sorghum | nucleus | 51.0 | 47.21 |
| Zm00001d037737_P001 | Maize | nucleus | 56.63 | 46.08 |
| CDY48451 | Canola | nucleus | 28.11 | 45.75 |
| HORVU1Hr1G029220.1 | Barley | nucleus | 59.44 | 45.4 |
| CDY19977 | Canola | nucleus | 18.47 | 45.1 |
| Zm00001d041781_P001 | Maize | nucleus | 51.81 | 44.95 |
| CDY60297 | Canola | nucleus | 52.61 | 44.86 |
| Zm00001d008882_P001 | Maize | nucleus | 57.03 | 43.16 |
| CDX67765 | Canola | nucleus | 59.44 | 42.53 |
| CDY71878 | Canola | endoplasmic reticulum | 39.36 | 37.26 |
| CDY11824 | Canola | nucleus | 36.55 | 37.14 |
| CDY66153 | Canola | nucleus | 36.55 | 37.14 |
| CDY18911 | Canola | nucleus | 34.94 | 36.71 |
| CDY34564 | Canola | nucleus | 31.73 | 36.24 |
| CDY36077 | Canola | nucleus | 32.13 | 36.2 |
| CDY42841 | Canola | nucleus | 34.54 | 35.83 |
| CDY15724 | Canola | nucleus | 36.14 | 35.71 |
| CDY27603 | Canola | nucleus | 36.14 | 35.57 |
| CDX84935 | Canola | nucleus | 35.74 | 35.46 |
| CDY47002 | Canola | nucleus | 34.14 | 35.27 |
| CDX69345 | Canola | nucleus | 32.13 | 35.24 |
| CDY43239 | Canola | nucleus | 35.34 | 35.2 |
| CDY25613 | Canola | nucleus | 32.13 | 35.09 |
| CDY16832 | Canola | nucleus | 33.73 | 34.85 |
| CDY18912 | Canola | nucleus | 33.73 | 34.85 |
| CDY58690 | Canola | nucleus | 33.73 | 34.85 |
| CDY57524 | Canola | nucleus | 34.94 | 34.8 |
| CDX74754 | Canola | nucleus | 35.74 | 34.77 |
| CDY26462 | Canola | nucleus | 35.34 | 34.65 |
| CDX72465 | Canola | nucleus | 33.33 | 34.58 |
| CDY34718 | Canola | nucleus | 34.94 | 34.52 |
| CDX75686 | Canola | nucleus | 31.73 | 34.5 |
| CDX89496 | Canola | nucleus | 31.73 | 34.5 |
| CDX90394 | Canola | nucleus | 31.73 | 34.5 |
| CDY02185 | Canola | nucleus | 33.33 | 34.44 |
| CDX75412 | Canola | nucleus | 32.93 | 34.17 |
| CDY49287 | Canola | nucleus | 32.93 | 34.17 |
| CDY04164 | Canola | nucleus | 35.34 | 34.11 |
| CDX69499 | Canola | nucleus | 36.14 | 34.09 |
| CDY53885 | Canola | nucleus | 34.94 | 33.85 |
| CDX69036 | Canola | nucleus | 32.53 | 33.75 |
| CDY03905 | Canola | nucleus | 36.14 | 33.33 |
| CDX78653 | Canola | nucleus | 34.54 | 33.2 |
| CDY51202 | Canola | nucleus | 34.14 | 33.07 |
| CDX70651 | Canola | nucleus | 34.14 | 32.82 |
| CDY02978 | Canola | nucleus | 33.73 | 32.81 |
| CDX89097 | Canola | nucleus | 30.92 | 31.3 |
| CDY65811 | Canola | nucleus | 32.13 | 31.25 |
| CDX86353 | Canola | nucleus | 30.92 | 30.92 |
| CDY00082 | Canola | nucleus | 30.52 | 30.65 |
| CDY45899 | Canola | nucleus | 30.52 | 30.52 |
| CDX95960 | Canola | nucleus | 31.33 | 30.47 |
| CDY33554 | Canola | nucleus | 31.33 | 30.47 |
| CDY04265 | Canola | nucleus | 31.73 | 28.52 |
| CDY33113 | Canola | nucleus | 34.54 | 27.83 |
| CDY07357 | Canola | nucleus | 31.33 | 26.99 |
| CDX71166 | Canola | nucleus | 32.13 | 22.99 |
| CDY42485 | Canola | nucleus | 32.13 | 21.16 |
| CDX85287 | Canola | nucleus | 15.26 | 20.32 |
| CDY45709 | Canola | nucleus | 13.65 | 19.65 |
| CDY49686 | Canola | nucleus | 13.25 | 19.08 |
| CDY35780 | Canola | nucleus | 14.46 | 18.27 |
| CDY65346 | Canola | cytosol | 1.61 | 16.0 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:A0A078F837 | UniProt:A0A078F837 | EnsemblPlants:CDY09267 | ProteinID:CDY09267 |
| ProteinID:CDY09267.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00001530001 | InterPro:IPR002100 |
| InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 |
| ScanProsite:PS00350 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF187 | SMART:SM00432 |
| SUPFAM:SSF55455 | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | UniParc:UPI0004EE5826 | SEG:seg |
Description
BnaC03g62970DBnaC03g62970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F837]
Coordinates
chrLK031994:+:155995..161178
Molecular Weight (calculated)
28320.5 Da
IEP (calculated)
9.955
GRAVY (calculated)
-0.820
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MELGGDSSPQ RKTAGRGKIE IKRIENTTNR QVTFCKRRNG LLKKAYELSV LCDAEVALIV FSSRGRLYEY SNNSVKGTIE RYKKAISDNS NTGSVAEINA
101: QYYQQESAKL RQQIISIQNS NRQLMGETIG SMSPKELRNL EGRLDRSINR IRSKKNELLF AEIDYMQKRE VDLHSDNQLL RAKIAENERN NPSMNLMPGG
201: SNYEQIIPPP QTNSQPFDSR NYFQVAALQP NNQHYSSAGR QDLTALQLV
101: QYYQQESAKL RQQIISIQNS NRQLMGETIG SMSPKELRNL EGRLDRSINR IRSKKNELLF AEIDYMQKRE VDLHSDNQLL RAKIAENERN NPSMNLMPGG
201: SNYEQIIPPP QTNSQPFDSR NYFQVAALQP NNQHYSSAGR QDLTALQLV
001: TAYQSELGGD SSPLRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LIVFSSRGRL YEYSNNSVKG TIERYKKAIS DNSNTGSVAE
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV
101: INAQYYQQES AKLRQQIISI QNSNRQLMGE TIGSMSPKEL RNLEGRLERS ITRIRSKKNE LLFSEIDYMQ KREVDLHNDN QILRAKIAEN ERNNPSISLM
201: PGGSNYEQLM PPPQTQSQPF DSRNYFQVAA LQPNNHHYSS AGRQDQTALQ LV
Arabidopsis Description
AGK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G18960]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.