Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G262700.1 | Wheat | nucleus | 89.09 | 98.0 |
| TraesCS1B01G273300.1 | Wheat | nucleus | 87.64 | 94.51 |
| Os01t0886200-01 | Rice | nucleus | 65.82 | 68.3 |
| Zm00001d042591_P002 | Maize | nucleus | 63.27 | 64.93 |
| KRH14461 | Soybean | nucleus | 24.36 | 64.42 |
| EES01878 | Sorghum | nucleus | 62.91 | 62.45 |
| VIT_10s0003g02070.t01 | Wine grape | nucleus | 50.91 | 61.95 |
| KRH21150 | Soybean | nucleus | 49.82 | 56.38 |
| TraesCS5A01G117500.1 | Wheat | nucleus | 51.27 | 55.51 |
| GSMUA_Achr5P06590_001 | Banana | nucleus | 35.27 | 55.43 |
| CDY09267 | Canola | nucleus | 50.18 | 55.42 |
| KRH46066 | Soybean | nucleus | 48.36 | 53.85 |
| Bra012564.1-P | Field mustard | nucleus | 49.09 | 53.78 |
| CDX98597 | Canola | nucleus | 49.09 | 53.78 |
| KRG98899 | Soybean | nucleus | 48.0 | 53.66 |
| PGSC0003DMT400073134 | Potato | nucleus | 48.36 | 53.63 |
| CDX78909 | Canola | nucleus | 49.09 | 53.57 |
| Bra013364.1-P | Field mustard | nucleus | 49.09 | 53.57 |
| Solyc02g071730.2.1 | Tomato | nucleus | 48.0 | 53.23 |
| AT4G18960.1 | Thale cress | nucleus | 48.73 | 53.17 |
| KRH42930 | Soybean | nucleus | 46.18 | 52.26 |
| Bra004716.1-P | Field mustard | nucleus | 46.18 | 52.05 |
| CDX79857 | Canola | nucleus | 46.18 | 52.05 |
| KRH59043 | Soybean | nucleus | 45.82 | 51.85 |
| KRH73684 | Soybean | nucleus | 46.18 | 51.63 |
| Bra007419.1-P | Field mustard | nucleus | 45.45 | 51.02 |
| CDX98330 | Canola | nucleus | 45.82 | 50.81 |
| Bra014552.1-P | Field mustard | nucleus | 45.82 | 50.81 |
| AT2G42830.2 | Thale cress | nucleus | 45.45 | 50.4 |
| TraesCS3A01G314300.1 | Wheat | nucleus | 49.82 | 50.18 |
| VIT_12s0142g00360.t01 | Wine grape | nucleus | 47.64 | 47.81 |
| Solyc07g055920.2.1 | Tomato | nucleus | 45.82 | 47.19 |
| PGSC0003DMT400044552 | Potato | nucleus | 43.27 | 46.85 |
| TraesCS1A01G125800.1 | Wheat | nucleus | 45.45 | 46.47 |
| CDY49254 | Canola | nucleus | 45.82 | 45.82 |
| AT3G58780.4 | Thale cress | nucleus | 46.55 | 45.55 |
| CDX89005 | Canola | nucleus | 45.45 | 45.29 |
| CDY00589 | Canola | nucleus | 45.09 | 45.09 |
| CDX99406 | Canola | nucleus | 49.82 | 43.91 |
| Bra003356.1-P | Field mustard | nucleus | 41.82 | 42.12 |
| TraesCS4A01G058900.1 | Wheat | nucleus | 23.64 | 38.24 |
| TraesCS7A01G122100.1 | Wheat | nucleus | 30.55 | 37.0 |
| TraesCS7A01G122000.1 | Wheat | nucleus | 30.55 | 37.0 |
| CDX67765 | Canola | nucleus | 46.55 | 36.78 |
| TraesCS1A01G045000.1 | Wheat | nucleus | 26.18 | 36.36 |
| TraesCS4A01G028200.1 | Wheat | nucleus | 30.18 | 35.78 |
| TraesCS4A01G028100.1 | Wheat | nucleus | 30.18 | 34.3 |
| TraesCS2A01G337900.1 | Wheat | nucleus | 29.82 | 34.17 |
| TraesCS6A01G292300.2 | Wheat | nucleus | 29.45 | 33.61 |
| TraesCS7A01G111900.1 | Wheat | nucleus | 28.0 | 33.48 |
| TraesCS5A01G391800.1 | Wheat | nucleus | 28.73 | 33.19 |
| TraesCS5A01G286800.1 | Wheat | nucleus | 30.18 | 32.94 |
| TraesCS7A01G260600.1 | Wheat | nucleus | 29.45 | 32.66 |
| TraesCS7A01G111800.1 | Wheat | nucleus | 27.27 | 32.61 |
| TraesCS7A01G111700.1 | Wheat | nucleus | 27.64 | 31.93 |
| TraesCS1A01G044900.1 | Wheat | nucleus | 27.64 | 31.28 |
| TraesCS2A01G174300.3 | Wheat | nucleus | 30.18 | 31.09 |
| TraesCS5A01G391700.1 | Wheat | nucleus | 26.91 | 30.33 |
| TraesCS6A01G259000.2 | Wheat | nucleus | 30.55 | 28.97 |
| TraesCS2A01G261200.2 | Wheat | nucleus | 28.36 | 28.47 |
| TraesCS4A01G078700.1 | Wheat | nucleus | 18.18 | 22.83 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF187 | SMART:SM00432 | SUPFAM:SSF55455 |
| SignalP:SignalP-noTM | InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS1A01G262700 | EnsemblPlants:TraesCS1A01G262700.1 |
| TIGR:cd00265 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:458216912..458220794
Molecular Weight (calculated)
30297.4 Da
IEP (calculated)
9.998
GRAVY (calculated)
-0.274
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIPVVSLVA LVIFVARRLE LLATMGRGKI EIKRIENTTS RQVTFCKRRN GLLKKAYELS VLCEAEIALI VFSARGRLYE YASNSTRTTI DRYKKASASA
101: SGSAPAIDVN SQQYFQQESA KLRHQIQSLQ NANRNLMGES VGNLTLKELK SLENRLDKGI GRIRAKKHEL LFAEIEYMQK LEADLQSENM YLRAKVADAE
201: RLALAAPPPS SGGAELEVLP TFDARTYYHH QAVSMLQDAA AASSSSRYSQ SSQAAAAAAT TALHLGYQIK GGQLN
101: SGSAPAIDVN SQQYFQQESA KLRHQIQSLQ NANRNLMGES VGNLTLKELK SLENRLDKGI GRIRAKKHEL LFAEIEYMQK LEADLQSENM YLRAKVADAE
201: RLALAAPPPS SGGAELEVLP TFDARTYYHH QAVSMLQDAA AASSSSRYSQ SSQAAAAAAT TALHLGYQIK GGQLN
001: MGRGKIEIKR IENSTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN NIRSTIERYK KACSDSTNTS TVQEINAAYY QQESAKLRQQ
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKHELLLVEI ENAQKREIEL DNENIYLRTK VAEVERYQQH HHQMVSGSEI NAIEALASRN
201: YFAHSIMTAG SGSGNGGSYS DPDKKILHLG
101: IQTIQNSNRN LMGDSLSSLS VKELKQVENR LEKAISRIRS KKHELLLVEI ENAQKREIEL DNENIYLRTK VAEVERYQQH HHQMVSGSEI NAIEALASRN
201: YFAHSIMTAG SGSGNGGSYS DPDKKILHLG
Arabidopsis Description
STKK-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT4G09960]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.