Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cytosol:
17211514
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G391700.1 | Wheat | nucleus | 93.7 | 97.54 |
| TraesCS5B01G396600.2 | Wheat | nucleus | 94.88 | 96.02 |
| KRH75125 | Soybean | nucleus | 21.26 | 88.52 |
| EER90862 | Sorghum | nucleus | 80.71 | 83.67 |
| HORVU5Hr1G095630.3 | Barley | nucleus, plastid | 92.52 | 76.55 |
| Os03t0752800-02 | Rice | nucleus | 70.87 | 73.17 |
| Zm00001d013259_P002 | Maize | nucleus | 79.13 | 72.04 |
| Zm00001d034045_P003 | Maize | nucleus | 77.17 | 67.35 |
| TraesCS2D01G262700.1 | Wheat | nucleus | 70.47 | 66.05 |
| Bra004361.1-P | Field mustard | nucleus | 46.06 | 61.9 |
| CDY19977 | Canola | nucleus | 24.8 | 61.76 |
| VIT_01s0011g00100.t01 | Wine grape | nucleus | 55.91 | 58.92 |
| Solyc06g069430.2.1 | Tomato | nucleus | 55.91 | 57.96 |
| VIT_17s0000g04990.t01 | Wine grape | nucleus | 55.12 | 57.61 |
| PGSC0003DMT400010451 | Potato | nucleus | 56.3 | 57.2 |
| Solyc03g114830.2.1 | Tomato | nucleus | 55.51 | 57.09 |
| CDY36077 | Canola | nucleus | 49.61 | 57.01 |
| CDY34564 | Canola | nucleus | 48.82 | 56.88 |
| PGSC0003DMT400063313 | Potato | nucleus | 55.51 | 56.85 |
| KRH07467 | Soybean | nucleus | 52.76 | 56.78 |
| KRH63171 | Soybean | nucleus | 53.94 | 56.15 |
| KRH70974 | Soybean | nucleus | 53.54 | 55.97 |
| KRH45412 | Soybean | nucleus | 51.97 | 55.93 |
| KRH54740 | Soybean | nucleus | 53.54 | 55.74 |
| Bra025411.1-P | Field mustard | nucleus | 38.58 | 55.68 |
| VIT_14s0083g01030.t01 | Wine grape | nucleus | 53.54 | 55.06 |
| KRH03173 | Soybean | nucleus | 51.18 | 54.39 |
| CDY58690 | Canola | nucleus | 51.18 | 53.94 |
| PGSC0003DMT400072888 | Potato | nucleus | 51.57 | 53.69 |
| KRH56774 | Soybean | nucleus | 51.57 | 53.69 |
| CDY02185 | Canola | nucleus | 50.79 | 53.53 |
| AT5G60910.1 | Thale cress | nucleus | 50.79 | 53.31 |
| Solyc05g056620.1.1 | Tomato | nucleus | 51.18 | 53.28 |
| Bra012997.1-P | Field mustard | nucleus | 50.39 | 53.11 |
| Bra029347.1-P | Field mustard | nucleus | 50.0 | 52.92 |
| CDY42841 | Canola | nucleus | 50.0 | 52.92 |
| Bra035952.1-P | Field mustard | nucleus | 49.61 | 52.28 |
| CDY47002 | Canola | nucleus | 49.61 | 52.28 |
| CDY16832 | Canola | nucleus | 49.61 | 52.28 |
| PGSC0003DMT400068325 | Potato | nucleus | 47.24 | 51.28 |
| AT1G69120.1 | Thale cress | nucleus | 51.57 | 51.17 |
| TraesCS2D01G181400.3 | Wheat | nucleus | 53.15 | 50.56 |
| Bra011021.1-P | Field mustard | nucleus | 50.39 | 50.39 |
| PGSC0003DMT400003485 | Potato | nucleus | 48.82 | 50.2 |
| Bra038326.1-P | Field mustard | nucleus | 50.39 | 50.0 |
| CDY65811 | Canola | nucleus | 50.39 | 50.0 |
| CDX95960 | Canola | nucleus | 50.39 | 50.0 |
| CDY33554 | Canola | nucleus | 50.0 | 49.61 |
| Solyc02g065730.1.1 | Tomato | nucleus | 45.67 | 49.57 |
| Solyc02g089210.2.1 | Tomato | nucleus | 48.43 | 49.2 |
| AT1G26310.1 | Thale cress | nucleus | 48.82 | 48.63 |
| KRH45099 | Soybean | nucleus | 46.85 | 47.98 |
| KRG93701 | Soybean | nucleus | 46.06 | 47.95 |
| TraesCS7D01G107200.1 | Wheat | nucleus | 17.72 | 46.39 |
| KRH18331 | Soybean | nucleus | 44.49 | 46.31 |
| TraesCS7D01G120500.1 | Wheat | nucleus | 41.34 | 46.26 |
| Bra004007.1-P | Field mustard | nucleus | 48.82 | 45.76 |
| CDY04265 | Canola | nucleus | 49.61 | 45.49 |
| KRH01382 | Soybean | nucleus | 45.28 | 45.45 |
| CDY00082 | Canola | nucleus | 43.7 | 44.76 |
| Bra036201.1-P | Field mustard | nucleus | 43.7 | 44.76 |
| TraesCS7D01G120600.1 | Wheat | nucleus | 39.76 | 44.49 |
| CDY07357 | Canola | nucleus | 50.0 | 43.94 |
| CDX86353 | Canola | nucleus | 42.52 | 43.37 |
| TraesCS4D01G243700.1 | Wheat | nucleus | 38.19 | 43.11 |
| AT3G30260.1 | Thale cress | nucleus | 42.13 | 42.97 |
| CDY45899 | Canola | nucleus | 41.73 | 42.57 |
| TraesCS5D01G401700.1 | Wheat | nucleus | 39.37 | 42.37 |
| TraesCS7D01G261600.1 | Wheat | nucleus | 40.94 | 41.94 |
| TraesCS5D01G294500.1 | Wheat | nucleus | 41.34 | 41.67 |
| TraesCS6D01G240200.3 | Wheat | nucleus | 42.13 | 39.34 |
| TraesCS4D01G245200.1 | Wheat | nucleus | 36.61 | 37.5 |
| TraesCS4D01G276100.1 | Wheat | nucleus | 35.43 | 37.34 |
| TraesCS6D01G273500.2 | Wheat | nucleus | 33.46 | 35.27 |
| TraesCS7D01G106900.1 | Wheat | nucleus | 31.1 | 34.35 |
| TraesCS7D01G106600.1 | Wheat | nucleus | 30.71 | 33.91 |
| TraesCS5D01G002200.2 | Wheat | nucleus | 30.71 | 33.48 |
| TraesCS1D01G045700.1 | Wheat | nucleus | 31.1 | 33.47 |
| TraesCS2D01G325000.1 | Wheat | nucleus | 31.5 | 33.33 |
| TraesCS5D01G118200.1 | Wheat | nucleus | 32.68 | 32.94 |
| TraesCS1D01G045500.1 | Wheat | nucleus | 31.5 | 32.92 |
| CDX85287 | Canola | nucleus | 24.02 | 32.62 |
| TraesCS1D01G045600.1 | Wheat | nucleus | 29.92 | 32.48 |
| TraesCS1D01G127700.1 | Wheat | nucleus | 32.68 | 30.86 |
| TraesCS1D01G262700.1 | Wheat | nucleus | 29.92 | 30.4 |
| CDY35780 | Canola | nucleus | 23.23 | 29.95 |
| TraesCS5D01G002100.1 | Wheat | nucleus | 25.98 | 29.33 |
| TraesCS3D01G140200.2 | Wheat | nucleus | 30.71 | 28.47 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 |
| PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF241 | SMART:SM00432 | SUPFAM:SSF55455 |
| InterPro:TF_Kbox | InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS5D01G401500 | EnsemblPlants:TraesCS5D01G401500.1 | TIGR:cd00265 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:467176608..467184463
Molecular Weight (calculated)
28774.5 Da
IEP (calculated)
9.000
GRAVY (calculated)
-0.711
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIIFST KGKLYEFSTE SCMDKILERY ERYSYAEKVL VSSESEIQGN WCHEYRKLKA
101: KVETIQKCQK HLMGEDLESL NLKELQQLEQ QLESSLKHIR SRKNQLMHES ISELQKKVSC QPCIPEPERS LQEENKVLQK ELVEKQKAQA AQQDQTQPQT
201: SSSSSSFMMR DAPPAAATSI HPAAAGERAG DAAVQPQAPP RTGLPLWMVS HING
101: KVETIQKCQK HLMGEDLESL NLKELQQLEQ QLESSLKHIR SRKNQLMHES ISELQKKVSC QPCIPEPERS LQEENKVLQK ELVEKQKAQA AQQDQTQPQT
201: SSSSSSFMMR DAPPAAATSI HPAAAGERAG DAAVQPQAPP RTGLPLWMVS HING
001: MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS SSMLRTLERY QKCNYGAPEP NVPSREALAE LSSQQEYLKL
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI
101: KERYDALQRT QRNLLGEDLG PLSTKELESL ERQLDSSLKQ IRALRTQFML DQLNDLQSKE RMLTETNKTL RLRLADGYQM PLQLNPNQEE VDHYGRHHHQ
201: QQQHSQAFFQ PLECEPILQI GYQGQQDGMG AGPSVNNYML GWLPYDTNSI
Arabidopsis Description
SEP3At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.