Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G203400.1 | Wheat | nucleus | 97.37 | 96.1 |
| TraesCS1A01G199600.2 | Wheat | nucleus | 83.77 | 83.04 |
| Solyc10g017640.1.1 | Tomato | nucleus | 20.61 | 77.05 |
| Zm00001d047355_P001 | Maize | nucleus | 25.0 | 76.0 |
| KRH48297 | Soybean | nucleus | 26.32 | 67.42 |
| Os10t0536100-01 | Rice | nucleus | 67.98 | 66.52 |
| KXG39016 | Sorghum | nucleus | 65.79 | 66.37 |
| HORVU1Hr1G051660.10 | Barley | nucleus | 41.67 | 61.69 |
| TraesCS5A01G515500.1 | Wheat | nucleus | 53.07 | 55.0 |
| KRH00625 | Soybean | nucleus | 47.37 | 51.67 |
| AT2G45660.1 | Thale cress | nucleus | 48.25 | 51.4 |
| Zm00001d047356_P002 | Maize | nucleus | 26.75 | 51.26 |
| CDY69077 | Canola | nucleus | 47.81 | 51.17 |
| Bra004928.1-P | Field mustard | nucleus | 47.81 | 51.17 |
| CDX74755 | Canola | nucleus | 47.81 | 51.17 |
| CDY27368 | Canola | nucleus | 47.81 | 51.17 |
| Bra000393.1-P | Field mustard | nucleus | 47.37 | 50.7 |
| Bra039324.1-P | Field mustard | nucleus | 47.37 | 50.7 |
| CDY37054 | Canola | nucleus | 47.37 | 50.7 |
| KRH40554 | Soybean | nucleus | 46.49 | 50.24 |
| CDY53886 | Canola | nucleus | 46.93 | 50.23 |
| CDY60689 | Canola | nucleus | 46.05 | 49.3 |
| PGSC0003DMT400026576 | Potato | nucleus | 45.61 | 48.6 |
| PGSC0003DMT400000028 | Potato | nucleus | 47.37 | 48.21 |
| KRH65189 | Soybean | nucleus | 43.42 | 41.77 |
| TraesCS6A01G011700.1 | Wheat | nucleus | 47.81 | 41.6 |
| TraesCS3A01G434700.1 | Wheat | nucleus | 17.11 | 38.24 |
| TraesCS3A01G434900.1 | Wheat | nucleus | 27.19 | 37.13 |
| TraesCS3A01G435000.1 | Wheat | nucleus | 27.19 | 37.13 |
| TraesCS3A01G434400.1 | Wheat | nucleus | 26.32 | 35.93 |
| KRH48299 | Soybean | nucleus | 21.49 | 35.77 |
| TraesCS3A01G432900.1 | Wheat | mitochondrion, nucleus | 24.56 | 33.73 |
| TraesCS5A01G520200.1 | Wheat | nucleus, plastid | 25.88 | 29.21 |
| TraesCS7A01G260900.1 | Wheat | nucleus | 25.88 | 28.78 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 |
| InterPro:IPR036879 | InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF341 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS1A01G199900 | EnsemblPlants:TraesCS1A01G199900.1 | TIGR:cd00265 | : |
Description
No Description!
Coordinates
chr1A:+:359228992..359245552
Molecular Weight (calculated)
25673.0 Da
IEP (calculated)
9.023
GRAVY (calculated)
-0.578
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRGKTEMKR IENETSRQVT FSKRRNGLLK KAFELSVLCD VEVALAVFCP RGRLYEFSSA TSLQKSIDRY KSYRKDNNVN NKTVQPDIQQ VKADTVSLAK
101: KLEALEVSKL KILGENLGGC SAEELNCLEV NIEKSLRIIR GKKTQVLEQQ IANLKEKERT LLKDNEDLRG KQRDLEASLV VPALNCVTPL QPRGQLAPEQ
201: EPVPSDEDVE TELYIGLPGV RCSNRRSG
101: KLEALEVSKL KILGENLGGC SAEELNCLEV NIEKSLRIIR GKKTQVLEQQ IANLKEKERT LLKDNEDLRG KQRDLEASLV VPALNCVTPL QPRGQLAPEQ
201: EPVPSDEDVE TELYIGLPGV RCSNRRSG
001: MVRGKTQMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVSLIIFSP KGKLYEFASS NMQDTIDRYL RHTKDRVSTK PVSEENMQHL KYEAANMMKK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
101: IEQLEASKRK LLGEGIGTCS IEELQQIEQQ LEKSVKCIRA RKTQVFKEQI EQLKQKEKAL AAENEKLSEK WGSHESEVWS NKNQESTGRG DEESSPSSEV
201: ETQLFIGLPC SSRK
Arabidopsis Description
SOC1SOC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.